The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
87
|
sequence length |
300
|
structure length |
293
|
Chain Sequence |
PRLLKIWRNYLNMNKYKVSYKGPGPGVKFSVEALRCHLRDHVNVSMIEATDFPFNTTEWEGYLPKENFRTKVGPWQRCAVVSSAGSLKNSQLGREIDNHDAVLRFNGAPTDNFQQDVGSKTTIRLMNSQLVTTEKRFLKDSLYTEGILIVWDPSVYHADIPKWYQKPDYNFFETYKSYRRLNPSQPFYILKPQMPWELWDIIQEISADLIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYHQTMGAYHPLLFEKNMVKHLNEGTDEDIYLFGKATLSGFRNIRC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Enzymatic Basis for N-Glycan Sialylation: STRUCTURE OF RAT alpha 2,6-SIALYLTRANSFERASE (ST6GAL1) REVEALS CONSERVED AND UNIQUE FEATURES FOR GLYCAN SIALYLATION.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Rattus norvegicus
|
| molecule keywords |
Beta-galactoside alpha-2,6-sialyltransferase 1
|
| total genus |
87
|
| structure length |
293
|
| sequence length |
300
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.4.99.1: Beta-galactoside alpha-(2,6)-sialyltransferase. |
| pdb deposition date | 2013-09-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00777 | Glyco_transf_29 | Glycosyltransferase family 29 (sialyltransferase) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | sialyltransferase cstii, chain A | sialyltransferase cstii, chain A |
#chains in the Genus database with same CATH superfamily 2WNB A; 4MPS A; 4JS1 A; 5BO6 A; 5BO9 A; 2WNF A; 4JS2 A; 2WML A; 5BO8 A; 5CXY A; 5BO7 A; #chains in the Genus database with same CATH topology 2X61 A; 2X62 A; 4JS1 A; 4JS2 A; 2P2V A; 2WML A; 1RO8 A; 2DRJ A; 2X63 A; 2P56 A; 5BO6 A; 2WQQ A; 5BO9 A; 5CXY A; 1RO7 A; 2WNB A; 4MPS A; 2WNF A; 5BO8 A; 5BO7 A; #chains in the Genus database with same CATH homology 2WNB A; 4MPS A; 4JS1 A; 5BO6 A; 5BO9 A; 2WNF A; 4JS2 A; 2WML A; 5BO8 A; 5CXY A; 5BO7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
