4QA8 | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	210
structure length	210
Chain Sequence	GSPSPEAQQILQDSSKATKGLHSVHVVVTVNNLSTLPFESVDADVTNQPQGNGQAVGNAKVRMKPNTPVVATEFLVTNKTMYTKRGGDYVSVGPAEKIYDPGIILDKDRGLGAVVGQVQNPTIQGRDAIDGLATVKVSGTIDAAVIDPIVPQLGKGGGRLPITLWIVDTNASTPAPAANLVRMVIDKDQGNVDITLSNWGAPVTIPNPAG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 210 atoms

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210 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure and functional implications of LprF from Mycobacterium tuberculosis and M. bovis pubmed doi rcsb
molecule keywords	Putative lipoprotein LprF
molecule tags	Lipid transport
source organism	Mycobacterium bovis
total genus	47
structure length	210
sequence length	210
ec nomenclature
pdb deposition date	2014-05-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07161	LppX_LprAFG	LppX_LprAFG lipoprotein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.20	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	outer membrane lipoprotein receptor (LolB), chain A	4qa8A00

3MHAA 4QA8A 2BYOA 3MH8A 4ZRAA 3MH9A
chains in the Genus database with same CATH superfamily

3M4WA 3BK5A 2YZYA 3BMZA 4EG9A 2ZPCA 2V43A 4EGDA 3BUUA 3WJTA 2P4BA 4KI3A 2ZF3A 3MH9A 2V42A 3KSNA 1IWLA 4QA8A 1IWNA 2ZF4A 3WJUA 2W7QA 2ZPDA 3MHAA 1UA8A 2BYOA 4MXTA 3MH8A 4Z48A 3WJVA 4ZRAA 1IWMA
chains in the Genus database with same CATH topology

3MHAA 3BMZA 4QA8A 4EG9A 2BYOA 2ZF4A 3MH8A 4EGDA 4ZRAA 3MH9A 2ZF3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3MHA A;  4QA8 A;  2BYO A;  3MH8 A;  4ZRA A;  3MH9 A; 
#chains in the Genus database with same CATH topology
 3M4W A;  3BK5 A;  2YZY A;  3BMZ A;  4EG9 A;  2ZPC A;  2V43 A;  4EGD A;  3BUU A;  3WJT A;  2P4B A;  4KI3 A;  2ZF3 A;  3MH9 A;  2V42 A;  3KSN A;  1IWL A;  4QA8 A;  1IWN A;  2ZF4 A;  3WJU A;  2W7Q A;  2ZPD A;  3MHA A;  1UA8 A;  2BYO A;  4MXT A;  3MH8 A;  4Z48 A;  3WJV A;  4ZRA A;  1IWM A; 
#chains in the Genus database with same CATH homology
 3MHA A;  3BMZ A;  4QA8 A;  4EG9 A;  2BYO A;  2ZF4 A;  3MH8 A;  4EGD A;  4ZRA A;  3MH9 A;  2ZF3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4QA8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations