The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
71
|
sequence length |
353
|
structure length |
337
|
Chain Sequence |
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCIKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Cocrystal Structures of Antibody N60-i3 and Antibody JR4 in Complex with gp120 Define More Cluster A Epitopes Involved in Effective Antibody-Dependent Effector Function against HIV-1.
pubmed doi rcsb |
| molecule tags |
Viral protein/immune system
|
| source organism |
Human immunodeficiency virus 1
|
| molecule keywords |
HIV-1 CLADE A/E 93TH057 (H375S) GP120
|
| total genus |
71
|
| structure length |
337
|
| sequence length |
353
|
| chains with identical sequence |
G
|
| ec nomenclature | |
| pdb deposition date | 2014-09-26 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | HIV Envelope Protein Gp120; Chain G | Human immunodeficiency virus 1, Gp160, envelope glycoprotein |
#chains in the Genus database with same CATH superfamily 5I9Q A; 4RFN A; 4RWY A; 4S1Q G; 5CAY G; 3TGQ A; 2BF1 A; 5F4R A; 4DVT A; 4JPW G; 3JWO A; 4LSV G; 4JDT G; 4YDI G; 5FEC C; 4DKU A; 2QAD A; 4KA2 A; 4DKQ A; 5CD5 A; 2I60 G; 3IDY A; 4OLX G; 2NY2 A; 4I53 A; 4JM2 E; 4YDJ G; 2NY1 A; 4LSS G; 5F4L A; 2NXZ A; 5IGX G; 4OLW G; 4LSP G; 1G9M G; 4DKP A; 3LQA G; 2NY4 A; 4DVX A; 5F9W A; 4JZW A; 4LSQ G; 1YYM G; 4DVV A; 4RX4 E; 4YFL E; 5F96 G; 3RJQ A; 3IDX G; 3HI1 G; 4XVS G; 5TE7 G; 2NY5 G; 3TGS A; 1YYL G; 4XNZ A; 2NY6 A; 5KJR G; 4DKO A; 5TE6 G; 5FA2 A; 5TE4 G; 4JKP G; 2B4C G; 1RZJ G; 4LST G; 5F4P A; 4DKV A; 4RZ8 A; 2NXY A; 1G9N G; 4XMP G; 4J6R G; 2NY0 A; 4I54 A; 4P9H G; 3SE8 G; 4R2G A; 4DVR G; 4YDL A; 4OLV G; 4H8W G; 4XNY G; 5F9O G; 4OM0 G; 4LSU G; 3NGB A; 4R4N A; 4DVS A; 4LSR G; 4OM1 G; 4YDK G; 1RZK G; 4JB9 G; 3U7Y G; 1GC1 G; 4OLU G; 5F4U A; 3TGT A; 2I5Y G; 3TIH A; 4OLZ G; 4DKR A; 4K0A A; 3TGR A; 3SE9 G; 3FUS A; 4S1S G; 4DVW A; 4RFO G; 4XVT G; 4OLY G; 4YE4 G; 4S1R G; 2NY7 G; 4LAJ A; 2NY3 A; 5T33 G; 3JWD A; 4R4F A; 4JZZ A; 4JPV G; #chains in the Genus database with same CATH topology 5I9Q A; 4RFN A; 4RWY A; 4S1Q G; 5CAY G; 3TGQ A; 2BF1 A; 5F4R A; 4DVT A; 4JPW G; 3JWO A; 4LSV G; 4JDT G; 4YDI G; 5FEC C; 4DKU A; 2QAD A; 4KA2 A; 4DKQ A; 5CD5 A; 2I60 G; 3IDY A; 4OLX G; 2NY2 A; 4I53 A; 4JM2 E; 4YDJ G; 2NY1 A; 4LSS G; 5F4L A; 2NXZ A; 5IGX G; 4OLW G; 4LSP G; 1G9M G; 4DKP A; 3LQA G; 2NY4 A; 4DVX A; 5F9W A; 4JZW A; 4LSQ G; 1YYM G; 4DVV A; 4RX4 E; 4YFL E; 5F96 G; 3RJQ A; 3IDX G; 3HI1 G; 4XVS G; 5TE7 G; 2NY5 G; 3TGS A; 1YYL G; 4XNZ A; 2NY6 A; 5KJR G; 4DKO A; 5TE6 G; 5FA2 A; 5TE4 G; 4JKP G; 2B4C G; 1RZJ G; 4LST G; 5F4P A; 4DKV A; 4RZ8 A; 2NXY A; 1G9N G; 4XMP G; 4J6R G; 2NY0 A; 4I54 A; 4P9H G; 3SE8 G; 4R2G A; 4DVR G; 4YDL A; 4OLV G; 4H8W G; 4XNY G; 5F9O G; 4OM0 G; 4LSU G; 3NGB A; 4R4N A; 4DVS A; 4LSR G; 4OM1 G; 4YDK G; 1RZK G; 4JB9 G; 3U7Y G; 1GC1 G; 4OLU G; 5F4U A; 3TGT A; 2I5Y G; 3TIH A; 4OLZ G; 4DKR A; 4K0A A; 3TGR A; 3SE9 G; 3FUS A; 4S1S G; 4DVW A; 4RFO G; 4XVT G; 4OLY G; 4YE4 G; 4S1R G; 2NY7 G; 4LAJ A; 2NY3 A; 5T33 G; 3JWD A; 4R4F A; 4JZZ A; 4JPV G; #chains in the Genus database with same CATH homology 5I9Q A; 4RFN A; 4RWY A; 4S1Q G; 5CAY G; 3TGQ A; 2BF1 A; 5F4R A; 4DVT A; 4JPW G; 3JWO A; 4LSV G; 4JDT G; 4YDI G; 5FEC C; 4DKU A; 2QAD A; 4KA2 A; 4DKQ A; 5CD5 A; 2I60 G; 3IDY A; 4OLX G; 2NY2 A; 4I53 A; 4JM2 E; 4YDJ G; 2NY1 A; 4LSS G; 5F4L A; 2NXZ A; 5IGX G; 4OLW G; 4LSP G; 1G9M G; 4DKP A; 3LQA G; 2NY4 A; 4DVX A; 5F9W A; 4JZW A; 4LSQ G; 1YYM G; 4DVV A; 4RX4 E; 4YFL E; 5F96 G; 3RJQ A; 3IDX G; 3HI1 G; 4XVS G; 5TE7 G; 2NY5 G; 3TGS A; 1YYL G; 4XNZ A; 2NY6 A; 5KJR G; 4DKO A; 5TE6 G; 5FA2 A; 5TE4 G; 4JKP G; 2B4C G; 1RZJ G; 4LST G; 5F4P A; 4DKV A; 4RZ8 A; 2NXY A; 1G9N G; 4XMP G; 4J6R G; 2NY0 A; 4I54 A; 4P9H G; 3SE8 G; 4R2G A; 4DVR G; 4YDL A; 4OLV G; 4H8W G; 4XNY G; 5F9O G; 4OM0 G; 4LSU G; 3NGB A; 4R4N A; 4DVS A; 4LSR G; 4OM1 G; 4YDK G; 1RZK G; 4JB9 G; 3U7Y G; 1GC1 G; 4OLU G; 5F4U A; 3TGT A; 2I5Y G; 3TIH A; 4OLZ G; 4DKR A; 4K0A A; 3TGR A; 3SE9 G; 3FUS A; 4S1S G; 4DVW A; 4RFO G; 4XVT G; 4OLY G; 4YE4 G; 4S1R G; 2NY7 G; 4LAJ A; 2NY3 A; 5T33 G; 3JWD A; 4R4F A; 4JZZ A; 4JPV G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
