4XJCA

Dctp deaminase-dutpase from bacillus halodurans
Total Genus 39
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
177
structure length
177
Chain Sequence
MILSGKTISEKLTEKELEITPLTEEQIQPASVDLRLGPHFVTIDDSKEAVISFERPIRYREWTTSDETIVLPPHTFLLATTMETVKLPNHLTAFVEGRSSVGRLGLFIQNAGWVDPGFNGQITLELFNANRLPIELPIGRRICQLVFAEVTGEVAPYQGKYLFQKGATMSEIYKDAF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-14)TIV2 (28-31)3H1 (24-26)EMPTYS2 (27-28)S3 (31-36)S7 (75-87)TII3 (137-140)S4 (39-43)TI1 (44-47)TI2 (45-48)TI3 (52-55)S11 (118-128)S6 (68-71)TI4 (88-91)TII2 (115-118)AH2 (99-103)S9 (106-108)S12 (134-137)S13 (140-149)TI6 (159-162)TII4 (161-164)TIV3 (165-168)S1 (18-20)TII1 (72-75)TI5 (108-111)TVIII1 (15-18)S5 (59-63)S10 (112-114)S8 (91-97)3H2 (172-174)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus halodurans c-125
publication title Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides.
pubmed doi rcsb
molecule keywords Deoxycytidine triphosphate deaminase
total genus 39
structure length 177
sequence length 177
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.4.30: dCTP deaminase (dUMP-forming).
pdb deposition date 2015-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4xjcA00
1F7KA 4XJCA 2XY3A 3TTAA 3T60A 3T64A 3TPWA 4B0HA 2PC5A 5CCTA 3EHWA 2BSYA 1RN8A 2Y8CA 2OKEA 2OKBA 4GK6A 4GV8A 3TQZA 2J4HA 1VYQA 3TSLA 1DUTA 3ZF2A 1XS1A 2OL0A 2HXDA 1SNFA 2YZJA 3H6XA 3T70A 3ARAA 3CA9A 3SO2A 3TPNA 1DUNA 3P48A 3ZEZA 2BAZA 1RNJA 3HZAA 3TQ5A 1F7RA 1F7DA 4AOOA 3HHQA 1F7NA 2OL1A 2QXXA 3LOJA 1SM8A 2WE2A 2XCDA 1PKJA 3TRLA 2BT1A 3C2TA 1EU5A 3TQ4A 1SMCA 2WE3A 3LQWA 1EUWA 4DHKA 4OOPA 1DUPA 4APZ1 4A6AA 1SLHA 1XS4A 2Y1TA 4LHRA 3GF0A 3ZF3A 2HXBA 2V9XA 1Q5HA 2QLPA 1F7PA 3TRNA 2HR6A 2D4MA 2D4NA 2ZDCA 2XX6A 3F4FA 3ZF4A 2HQUA 1SEHA 2J4QA 1F7OA 2XCEA 3ARNA 3ZF5A 3C3IA 3H6DA 1F7QA 1OGHA 3MBQA 5F9KA 1SIXA 2WE1A 1PKKA 3TQ3A 3ZF0A 2R9QA 3KM3A 4AO5A 2D4LA 3ZF6A 1DUDA 3TPYA 3ZF1A 3TPSA 1MQ7A 1Q5UX 2PY4A 3MDXA 4AOZA 1DUCA 2OKDA 5CCOA 3TP1A 1PKHA 2HRMA 3I93A 2WE0A 3ECYA 1XS6A 5ECTA 4GCYA 3TS6A 4WRKA 4OOQA 5EDDA 3T6YA 1SYLA 1SJNA
chains in the Genus database with same CATH superfamily
1F7KA 4XJCA 2XY3A 3TTAA 3T60A 3T64A 3TPWA 4B0HA 2PC5A 5CCTA 3EHWA 2BSYA 1RN8A 2Y8CA 2OKEA 2OKBA 4GK6A 4GV8A 3TQZA 2J4HA 1VYQA 3TSLA 1DUTA 3ZF2A 1XS1A 2OL0A 2HXDA 1SNFA 2YZJA 3H6XA 3T70A 3ARAA 3CA9A 3SO2A 3TPNA 1DUNA 3P48A 3ZEZA 2BAZA 1RNJA 3HZAA 3TQ5A 1F7RA 1F7DA 4AOOA 3HHQA 1F7NA 2OL1A 2QXXA 3LOJA 1SM8A 2WE2A 2XCDA 1PKJA 3TRLA 2BT1A 3C2TA 1EU5A 3TQ4A 1SMCA 2WE3A 3LQWA 1EUWA 4DHKA 4OOPA 1DUPA 4APZ1 4A6AA 1SLHA 1XS4A 2Y1TA 4LHRA 3GF0A 3ZF3A 2HXBA 2V9XA 1Q5HA 2QLPA 1F7PA 3TRNA 2HR6A 2D4MA 2D4NA 2ZDCA 2XX6A 3F4FA 3ZF4A 2HQUA 1SEHA 2J4QA 1TULA 1F7OA 2XCEA 3ARNA 3ZF5A 3C3IA 3H6DA 1F7QA 1OGHA 3MBQA 5F9KA 1SIXA 2WE1A 1PKKA 3TQ3A 3ZF0A 2R9QA 3KM3A 4AO5A 2D4LA 3ZF6A 1DUDA 3TPYA 3ZF1A 3TPSA 1MQ7A 1Q5UX 2PY4A 3MDXA 4AOZA 1DUCA 2OKDA 5CCOA 3TP1A 1PKHA 2HRMA 3I93A 2WE0A 3ECYA 1XS6A 5ECTA 4GCYA 3TS6A 4WRKA 4OOQA 5EDDA 3T6YA 1SYLA 1SJNA
chains in the Genus database with same CATH topology
1F7KA 4XJCA 2XY3A 3TTAA 3T60A 3T64A 3TPWA 4B0HA 2PC5A 5CCTA 3EHWA 2BSYA 1RN8A 2Y8CA 2OKEA 2OKBA 4GK6A 4GV8A 3TQZA 2J4HA 1VYQA 3TSLA 1DUTA 3ZF2A 1XS1A 2OL0A 2HXDA 1SNFA 2YZJA 3H6XA 3T70A 3ARAA 3CA9A 3SO2A 3TPNA 1DUNA 3P48A 3ZEZA 2BAZA 1RNJA 3HZAA 3TQ5A 1F7RA 1F7DA 4AOOA 3HHQA 1F7NA 2OL1A 2QXXA 3LOJA 1SM8A 2WE2A 2XCDA 1PKJA 3TRLA 2BT1A 3C2TA 1EU5A 3TQ4A 1SMCA 2WE3A 3LQWA 1EUWA 4DHKA 4OOPA 1DUPA 4APZ1 4A6AA 1SLHA 1XS4A 2Y1TA 4LHRA 3GF0A 3ZF3A 2HXBA 2V9XA 1Q5HA 2QLPA 1F7PA 3TRNA 2HR6A 2D4MA 2D4NA 2ZDCA 2XX6A 3F4FA 3ZF4A 2HQUA 1SEHA 2J4QA 1F7OA 2XCEA 3ARNA 3ZF5A 3C3IA 3H6DA 1F7QA 1OGHA 3MBQA 5F9KA 1SIXA 2WE1A 1PKKA 3TQ3A 3ZF0A 2R9QA 3KM3A 4AO5A 2D4LA 3ZF6A 1DUDA 3TPYA 3ZF1A 3TPSA 1MQ7A 1Q5UX 2PY4A 3MDXA 4AOZA 1DUCA 2OKDA 5CCOA 3TP1A 1PKHA 2HRMA 3I93A 2WE0A 3ECYA 1XS6A 5ECTA 4GCYA 3TS6A 4WRKA 4OOQA 5EDDA 3T6YA 1SYLA 1SJNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F7K A;  4XJC A;  2XY3 A;  3TTA A;  3T60 A;  3T64 A;  3TPW A;  4B0H A;  2PC5 A;  5CCT A;  3EHW A;  2BSY A;  1RN8 A;  2Y8C A;  2OKE A;  2OKB A;  4GK6 A;  4GV8 A;  3TQZ A;  2J4H A;  1VYQ A;  3TSL A;  1DUT A;  3ZF2 A;  1XS1 A;  2OL0 A;  2HXD A;  1SNF A;  2YZJ A;  3H6X A;  3T70 A;  3ARA A;  3CA9 A;  3SO2 A;  3TPN A;  1DUN A;  3P48 A;  3ZEZ A;  2BAZ A;  1RNJ A;  3HZA A;  3TQ5 A;  1F7R A;  1F7D A;  4AOO A;  3HHQ A;  1F7N A;  2OL1 A;  2QXX A;  3LOJ A;  1SM8 A;  2WE2 A;  2XCD A;  1PKJ A;  3TRL A;  2BT1 A;  3C2T A;  1EU5 A;  3TQ4 A;  1SMC A;  2WE3 A;  3LQW A;  1EUW A;  4DHK A;  4OOP A;  1DUP A;  4APZ 1;  4A6A A;  1SLH A;  1XS4 A;  2Y1T A;  4LHR A;  3GF0 A;  3ZF3 A;  2HXB A;  2V9X A;  1Q5H A;  2QLP A;  1F7P A;  3TRN A;  2HR6 A;  2D4M A;  2D4N A;  2ZDC A;  2XX6 A;  3F4F A;  3ZF4 A;  2HQU A;  1SEH A;  2J4Q A;  1F7O A;  2XCE A;  3ARN A;  3ZF5 A;  3C3I A;  3H6D A;  1F7Q A;  1OGH A;  3MBQ A;  5F9K A;  1SIX A;  2WE1 A;  1PKK A;  3TQ3 A;  3ZF0 A;  2R9Q A;  3KM3 A;  4AO5 A;  2D4L A;  3ZF6 A;  1DUD A;  3TPY A;  3ZF1 A;  3TPS A;  1MQ7 A;  1Q5U X;  2PY4 A;  3MDX A;  4AOZ A;  1DUC A;  2OKD A;  5CCO A;  3TP1 A;  1PKH A;  2HRM A;  3I93 A;  2WE0 A;  3ECY A;  1XS6 A;  5ECT A;  4GCY A;  3TS6 A;  4WRK A;  4OOQ A;  5EDD A;  3T6Y A;  1SYL A;  1SJN A; 
#chains in the Genus database with same CATH topology
 1F7K A;  4XJC A;  2XY3 A;  3TTA A;  3T60 A;  3T64 A;  3TPW A;  4B0H A;  2PC5 A;  5CCT A;  3EHW A;  2BSY A;  1RN8 A;  2Y8C A;  2OKE A;  2OKB A;  4GK6 A;  4GV8 A;  3TQZ A;  2J4H A;  1VYQ A;  3TSL A;  1DUT A;  3ZF2 A;  1XS1 A;  2OL0 A;  2HXD A;  1SNF A;  2YZJ A;  3H6X A;  3T70 A;  3ARA A;  3CA9 A;  3SO2 A;  3TPN A;  1DUN A;  3P48 A;  3ZEZ A;  2BAZ A;  1RNJ A;  3HZA A;  3TQ5 A;  1F7R A;  1F7D A;  4AOO A;  3HHQ A;  1F7N A;  2OL1 A;  2QXX A;  3LOJ A;  1SM8 A;  2WE2 A;  2XCD A;  1PKJ A;  3TRL A;  2BT1 A;  3C2T A;  1EU5 A;  3TQ4 A;  1SMC A;  2WE3 A;  3LQW A;  1EUW A;  4DHK A;  4OOP A;  1DUP A;  4APZ 1;  4A6A A;  1SLH A;  1XS4 A;  2Y1T A;  4LHR A;  3GF0 A;  3ZF3 A;  2HXB A;  2V9X A;  1Q5H A;  2QLP A;  1F7P A;  3TRN A;  2HR6 A;  2D4M A;  2D4N A;  2ZDC A;  2XX6 A;  3F4F A;  3ZF4 A;  2HQU A;  1SEH A;  2J4Q A;  1TUL A;  1F7O A;  2XCE A;  3ARN A;  3ZF5 A;  3C3I A;  3H6D A;  1F7Q A;  1OGH A;  3MBQ A;  5F9K A;  1SIX A;  2WE1 A;  1PKK A;  3TQ3 A;  3ZF0 A;  2R9Q A;  3KM3 A;  4AO5 A;  2D4L A;  3ZF6 A;  1DUD A;  3TPY A;  3ZF1 A;  3TPS A;  1MQ7 A;  1Q5U X;  2PY4 A;  3MDX A;  4AOZ A;  1DUC A;  2OKD A;  5CCO A;  3TP1 A;  1PKH A;  2HRM A;  3I93 A;  2WE0 A;  3ECY A;  1XS6 A;  5ECT A;  4GCY A;  3TS6 A;  4WRK A;  4OOQ A;  5EDD A;  3T6Y A;  1SYL A;  1SJN A; 
#chains in the Genus database with same CATH homology
 1F7K A;  4XJC A;  2XY3 A;  3TTA A;  3T60 A;  3T64 A;  3TPW A;  4B0H A;  2PC5 A;  5CCT A;  3EHW A;  2BSY A;  1RN8 A;  2Y8C A;  2OKE A;  2OKB A;  4GK6 A;  4GV8 A;  3TQZ A;  2J4H A;  1VYQ A;  3TSL A;  1DUT A;  3ZF2 A;  1XS1 A;  2OL0 A;  2HXD A;  1SNF A;  2YZJ A;  3H6X A;  3T70 A;  3ARA A;  3CA9 A;  3SO2 A;  3TPN A;  1DUN A;  3P48 A;  3ZEZ A;  2BAZ A;  1RNJ A;  3HZA A;  3TQ5 A;  1F7R A;  1F7D A;  4AOO A;  3HHQ A;  1F7N A;  2OL1 A;  2QXX A;  3LOJ A;  1SM8 A;  2WE2 A;  2XCD A;  1PKJ A;  3TRL A;  2BT1 A;  3C2T A;  1EU5 A;  3TQ4 A;  1SMC A;  2WE3 A;  3LQW A;  1EUW A;  4DHK A;  4OOP A;  1DUP A;  4APZ 1;  4A6A A;  1SLH A;  1XS4 A;  2Y1T A;  4LHR A;  3GF0 A;  3ZF3 A;  2HXB A;  2V9X A;  1Q5H A;  2QLP A;  1F7P A;  3TRN A;  2HR6 A;  2D4M A;  2D4N A;  2ZDC A;  2XX6 A;  3F4F A;  3ZF4 A;  2HQU A;  1SEH A;  2J4Q A;  1F7O A;  2XCE A;  3ARN A;  3ZF5 A;  3C3I A;  3H6D A;  1F7Q A;  1OGH A;  3MBQ A;  5F9K A;  1SIX A;  2WE1 A;  1PKK A;  3TQ3 A;  3ZF0 A;  2R9Q A;  3KM3 A;  4AO5 A;  2D4L A;  3ZF6 A;  1DUD A;  3TPY A;  3ZF1 A;  3TPS A;  1MQ7 A;  1Q5U X;  2PY4 A;  3MDX A;  4AOZ A;  1DUC A;  2OKD A;  5CCO A;  3TP1 A;  1PKH A;  2HRM A;  3I93 A;  2WE0 A;  3ECY A;  1XS6 A;  5ECT A;  4GCY A;  3TS6 A;  4WRK A;  4OOQ A;  5EDD A;  3T6Y A;  1SYL A;  1SJN A; 
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