4Z48 | Genus

Total Genus 66

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	66
sequence length	240
structure length	240
Chain Sequence	TDPVKAGYDLAVRMDQVDTSQDSYSEAVMSINRGGKVLTRSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDMWVYLPAESLVRRISGSSKFASFMRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDGIWTVTQMRVERPREGSFTVIDWSNLRYDVGLSDAYFEHSALQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 240 atoms

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240 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a DUF1329 family protein (DESPIG_00262) from Desulfovibrio piger ATCC 29098 at 1.75 A resolution rcsb
molecule keywords	Uncharacterized protein
molecule tags	Structural biology, unknown function
source organism	Desulfovibrio piger atcc 29098
total genus	66
structure length	240
sequence length	240
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-04-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF17131	LolA_like	Outer membrane lipoprotein-sorting protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	4z48A00

1IWNA 2P4BA 4MXTA 1UA8A 2V42A 3BUUA 2V43A 2ZPCA 3WJUA 2W7QA 2YZYA 3WJTA 3WJVA 4Z48A 3M4WA 3KSNA 1IWLA 3BK5A 1IWMA 4KI3A 2ZPDA
chains in the Genus database with same CATH superfamily

3MH9A 3MHAA 1IWNA 2P4BA 4MXTA 1UA8A 2V42A 3BUUA 2V43A 2ZPCA 3WJUA 2W7QA 2YZYA 3WJTA 4EGDA 3WJVA 4QA8A 2BYOA 4ZRAA 3MH8A 4EG9A 4Z48A 2ZF4A 2ZF3A 3M4WA 3KSNA 1IWLA 3BK5A 1IWMA 3BMZA 4KI3A 2ZPDA
chains in the Genus database with same CATH topology

1IWNA 2P4BA 4MXTA 1UA8A 2V42A 3BUUA 2V43A 2ZPCA 3WJUA 2W7QA 2YZYA 3WJTA 3WJVA 4Z48A 3M4WA 3KSNA 1IWLA 3BK5A 1IWMA 4KI3A 2ZPDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IWN A;  2P4B A;  4MXT A;  1UA8 A;  2V42 A;  3BUU A;  2V43 A;  2ZPC A;  3WJU A;  2W7Q A;  2YZY A;  3WJT A;  3WJV A;  4Z48 A;  3M4W A;  3KSN A;  1IWL A;  3BK5 A;  1IWM A;  4KI3 A;  2ZPD A; 
#chains in the Genus database with same CATH topology
 3MH9 A;  3MHA A;  1IWN A;  2P4B A;  4MXT A;  1UA8 A;  2V42 A;  3BUU A;  2V43 A;  2ZPC A;  3WJU A;  2W7Q A;  2YZY A;  3WJT A;  4EGD A;  3WJV A;  4QA8 A;  2BYO A;  4ZRA A;  3MH8 A;  4EG9 A;  4Z48 A;  2ZF4 A;  2ZF3 A;  3M4W A;  3KSN A;  1IWL A;  3BK5 A;  1IWM A;  3BMZ A;  4KI3 A;  2ZPD A; 
#chains in the Genus database with same CATH homology
 1IWN A;  2P4B A;  4MXT A;  1UA8 A;  2V42 A;  3BUU A;  2V43 A;  2ZPC A;  3WJU A;  2W7Q A;  2YZY A;  3WJT A;  3WJV A;  4Z48 A;  3M4W A;  3KSN A;  1IWL A;  3BK5 A;  1IWM A;  4KI3 A;  2ZPD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4Z48A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations