4AOZA

B. subtilis dutpase yncf in complex with du, ppi and mg (p212121)
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
130
structure length
130
Chain Sequence
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (6-9)TI5 (87-90)EMPTYS2 (26-30)TI1 (11-14)S10 (108-117)TVIII1 (23-26)S4 (40-51)TII3 (105-108)S9 (102-104)S3 (34-36)TIV3 (98-101)TII1 (37-40)TII2 (53-56)TI4 (82-85)S5 (56-62)S7 (79-81)S6 (72-74)TIV1 (76-79)AH1 (64-70)S8 (92-98)TI3 (74-77)TIV2 (83-86)TI2 (20-23)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus subtilis
publication title Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism
pubmed doi rcsb
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
total genus 23
structure length 130
sequence length 130
chains with identical sequence B, C
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4aozA01
3H6XA 3ZF5A 5CCTA 3TQ4A 1XS1A 4DHKA 3CA9A 3T6YA 2HQUA 2R9QA 1XS4A 4GV8A 3SO2A 2OL0A 3EHWA 1EUWA 2XCEA 1DUCA 2V9XA 2OKBA 3F4FA 2OKDA 1F7KA 1XS6A 3ARNA 1F7QA 2WE1A 3LQWA 3TTAA 5CCOA 2Y1TA 1Q5UX 1SJNA 3C3IA 3ZF0A 2QLPA 1DUPA 3ARAA 2J4HA 3T60A 3TPWA 3ZF3A 2OL1A 4AOZA 3HZAA 1SMCA 1DUDA 1OGHA 1PKKA 1MQ7A 3TPYA 3ZF2A 4B0HA 1SM8A 2ZDCA 2HRMA 1RNJA 1DUNA 4WRKA 3ZF6A 3TQ5A 3HHQA 3MBQA 4A6AA 2YZJA 3ZF1A 2XX6A 2PC5A 2D4MA 1PKHA 2D4NA 3TS6A 3T64A 5EDDA 1F7RA 3MDXA 3GF0A 4APZ1 3TSLA 3ZF4A 1VYQA 2BT1A 2D4LA 2OKEA 1SIXA 4AOOA 2WE0A 3TRNA 3C2TA 1RN8A 4XJCA 4OOQA 2QXXA 2HXDA 1SYLA 4LHRA 3H6DA 1F7PA 3TQ3A 3TPSA 2WE3A 2WE2A 2BAZA 2PY4A 1SNFA 1F7OA 1F7NA 3I93A 4OOPA 2BSYA 4AO5A 1F7DA 1EU5A 1Q5HA 1DUTA 5ECTA 3T70A 2XCDA 1SLHA 2HXBA 5F9KA 3LOJA 3ECYA 3ZEZA 3TRLA 2J4QA 4GK6A 3TP1A 3TPNA 1PKJA 3P48A 4GCYA 1SEHA 2HR6A 3TQZA 3KM3A 2Y8CA 2XY3A
chains in the Genus database with same CATH superfamily
3H6XA 3ZF5A 5CCTA 3TQ4A 1XS1A 4DHKA 3CA9A 3T6YA 2HQUA 2R9QA 1XS4A 4GV8A 3SO2A 2OL0A 3EHWA 1EUWA 2XCEA 1DUCA 2V9XA 2OKBA 3F4FA 2OKDA 1F7KA 1XS6A 3ARNA 1F7QA 2WE1A 3LQWA 3TTAA 5CCOA 2Y1TA 1Q5UX 1SJNA 3C3IA 3ZF0A 2QLPA 1DUPA 3ARAA 2J4HA 3T60A 3TPWA 3ZF3A 2OL1A 4AOZA 3HZAA 1SMCA 1DUDA 1OGHA 1PKKA 1MQ7A 3TPYA 3ZF2A 4B0HA 1SM8A 2ZDCA 2HRMA 1RNJA 1DUNA 4WRKA 3ZF6A 3TQ5A 3HHQA 3MBQA 4A6AA 2YZJA 3ZF1A 2XX6A 2PC5A 2D4MA 1PKHA 1TULA 2D4NA 3TS6A 3T64A 5EDDA 1F7RA 3MDXA 3GF0A 4APZ1 3TSLA 3ZF4A 1VYQA 2BT1A 2D4LA 2OKEA 1SIXA 4AOOA 2WE0A 3TRNA 3C2TA 1RN8A 4XJCA 4OOQA 2QXXA 2HXDA 1SYLA 4LHRA 3H6DA 1F7PA 3TQ3A 3TPSA 2WE3A 2WE2A 2BAZA 2PY4A 1SNFA 1F7OA 1F7NA 3I93A 4OOPA 2BSYA 4AO5A 1F7DA 1EU5A 1Q5HA 1DUTA 5ECTA 3T70A 2XCDA 1SLHA 2HXBA 5F9KA 3LOJA 3ECYA 3ZEZA 3TRLA 2J4QA 4GK6A 3TP1A 3TPNA 1PKJA 3P48A 4GCYA 1SEHA 2HR6A 3TQZA 3KM3A 2Y8CA 2XY3A
chains in the Genus database with same CATH topology
3H6XA 3ZF5A 5CCTA 3TQ4A 1XS1A 4DHKA 3CA9A 3T6YA 2HQUA 2R9QA 1XS4A 4GV8A 3SO2A 2OL0A 3EHWA 1EUWA 2XCEA 1DUCA 2V9XA 2OKBA 3F4FA 2OKDA 1F7KA 1XS6A 3ARNA 1F7QA 2WE1A 3LQWA 3TTAA 5CCOA 2Y1TA 1Q5UX 1SJNA 3C3IA 3ZF0A 2QLPA 1DUPA 3ARAA 2J4HA 3T60A 3TPWA 3ZF3A 2OL1A 4AOZA 3HZAA 1SMCA 1DUDA 1OGHA 1PKKA 1MQ7A 3TPYA 3ZF2A 4B0HA 1SM8A 2ZDCA 2HRMA 1RNJA 1DUNA 4WRKA 3ZF6A 3TQ5A 3HHQA 3MBQA 4A6AA 2YZJA 3ZF1A 2XX6A 2PC5A 2D4MA 1PKHA 2D4NA 3TS6A 3T64A 5EDDA 1F7RA 3MDXA 3GF0A 4APZ1 3TSLA 3ZF4A 1VYQA 2BT1A 2D4LA 2OKEA 1SIXA 4AOOA 2WE0A 3TRNA 3C2TA 1RN8A 4XJCA 4OOQA 2QXXA 2HXDA 1SYLA 4LHRA 3H6DA 1F7PA 3TQ3A 3TPSA 2WE3A 2WE2A 2BAZA 2PY4A 1SNFA 1F7OA 1F7NA 3I93A 4OOPA 2BSYA 4AO5A 1F7DA 1EU5A 1Q5HA 1DUTA 5ECTA 3T70A 2XCDA 1SLHA 2HXBA 5F9KA 3LOJA 3ECYA 3ZEZA 3TRLA 2J4QA 4GK6A 3TP1A 3TPNA 1PKJA 3P48A 4GCYA 1SEHA 2HR6A 3TQZA 3KM3A 2Y8CA 2XY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H6X A;  3ZF5 A;  5CCT A;  3TQ4 A;  1XS1 A;  4DHK A;  3CA9 A;  3T6Y A;  2HQU A;  2R9Q A;  1XS4 A;  4GV8 A;  3SO2 A;  2OL0 A;  3EHW A;  1EUW A;  2XCE A;  1DUC A;  2V9X A;  2OKB A;  3F4F A;  2OKD A;  1F7K A;  1XS6 A;  3ARN A;  1F7Q A;  2WE1 A;  3LQW A;  3TTA A;  5CCO A;  2Y1T A;  1Q5U X;  1SJN A;  3C3I A;  3ZF0 A;  2QLP A;  1DUP A;  3ARA A;  2J4H A;  3T60 A;  3TPW A;  3ZF3 A;  2OL1 A;  4AOZ A;  3HZA A;  1SMC A;  1DUD A;  1OGH A;  1PKK A;  1MQ7 A;  3TPY A;  3ZF2 A;  4B0H A;  1SM8 A;  2ZDC A;  2HRM A;  1RNJ A;  1DUN A;  4WRK A;  3ZF6 A;  3TQ5 A;  3HHQ A;  3MBQ A;  4A6A A;  2YZJ A;  3ZF1 A;  2XX6 A;  2PC5 A;  2D4M A;  1PKH A;  2D4N A;  3TS6 A;  3T64 A;  5EDD A;  1F7R A;  3MDX A;  3GF0 A;  4APZ 1;  3TSL A;  3ZF4 A;  1VYQ A;  2BT1 A;  2D4L A;  2OKE A;  1SIX A;  4AOO A;  2WE0 A;  3TRN A;  3C2T A;  1RN8 A;  4XJC A;  4OOQ A;  2QXX A;  2HXD A;  1SYL A;  4LHR A;  3H6D A;  1F7P A;  3TQ3 A;  3TPS A;  2WE3 A;  2WE2 A;  2BAZ A;  2PY4 A;  1SNF A;  1F7O A;  1F7N A;  3I93 A;  4OOP A;  2BSY A;  4AO5 A;  1F7D A;  1EU5 A;  1Q5H A;  1DUT A;  5ECT A;  3T70 A;  2XCD A;  1SLH A;  2HXB A;  5F9K A;  3LOJ A;  3ECY A;  3ZEZ A;  3TRL A;  2J4Q A;  4GK6 A;  3TP1 A;  3TPN A;  1PKJ A;  3P48 A;  4GCY A;  1SEH A;  2HR6 A;  3TQZ A;  3KM3 A;  2Y8C A;  2XY3 A; 
#chains in the Genus database with same CATH topology
 3H6X A;  3ZF5 A;  5CCT A;  3TQ4 A;  1XS1 A;  4DHK A;  3CA9 A;  3T6Y A;  2HQU A;  2R9Q A;  1XS4 A;  4GV8 A;  3SO2 A;  2OL0 A;  3EHW A;  1EUW A;  2XCE A;  1DUC A;  2V9X A;  2OKB A;  3F4F A;  2OKD A;  1F7K A;  1XS6 A;  3ARN A;  1F7Q A;  2WE1 A;  3LQW A;  3TTA A;  5CCO A;  2Y1T A;  1Q5U X;  1SJN A;  3C3I A;  3ZF0 A;  2QLP A;  1DUP A;  3ARA A;  2J4H A;  3T60 A;  3TPW A;  3ZF3 A;  2OL1 A;  4AOZ A;  3HZA A;  1SMC A;  1DUD A;  1OGH A;  1PKK A;  1MQ7 A;  3TPY A;  3ZF2 A;  4B0H A;  1SM8 A;  2ZDC A;  2HRM A;  1RNJ A;  1DUN A;  4WRK A;  3ZF6 A;  3TQ5 A;  3HHQ A;  3MBQ A;  4A6A A;  2YZJ A;  3ZF1 A;  2XX6 A;  2PC5 A;  2D4M A;  1PKH A;  1TUL A;  2D4N A;  3TS6 A;  3T64 A;  5EDD A;  1F7R A;  3MDX A;  3GF0 A;  4APZ 1;  3TSL A;  3ZF4 A;  1VYQ A;  2BT1 A;  2D4L A;  2OKE A;  1SIX A;  4AOO A;  2WE0 A;  3TRN A;  3C2T A;  1RN8 A;  4XJC A;  4OOQ A;  2QXX A;  2HXD A;  1SYL A;  4LHR A;  3H6D A;  1F7P A;  3TQ3 A;  3TPS A;  2WE3 A;  2WE2 A;  2BAZ A;  2PY4 A;  1SNF A;  1F7O A;  1F7N A;  3I93 A;  4OOP A;  2BSY A;  4AO5 A;  1F7D A;  1EU5 A;  1Q5H A;  1DUT A;  5ECT A;  3T70 A;  2XCD A;  1SLH A;  2HXB A;  5F9K A;  3LOJ A;  3ECY A;  3ZEZ A;  3TRL A;  2J4Q A;  4GK6 A;  3TP1 A;  3TPN A;  1PKJ A;  3P48 A;  4GCY A;  1SEH A;  2HR6 A;  3TQZ A;  3KM3 A;  2Y8C A;  2XY3 A; 
#chains in the Genus database with same CATH homology
 3H6X A;  3ZF5 A;  5CCT A;  3TQ4 A;  1XS1 A;  4DHK A;  3CA9 A;  3T6Y A;  2HQU A;  2R9Q A;  1XS4 A;  4GV8 A;  3SO2 A;  2OL0 A;  3EHW A;  1EUW A;  2XCE A;  1DUC A;  2V9X A;  2OKB A;  3F4F A;  2OKD A;  1F7K A;  1XS6 A;  3ARN A;  1F7Q A;  2WE1 A;  3LQW A;  3TTA A;  5CCO A;  2Y1T A;  1Q5U X;  1SJN A;  3C3I A;  3ZF0 A;  2QLP A;  1DUP A;  3ARA A;  2J4H A;  3T60 A;  3TPW A;  3ZF3 A;  2OL1 A;  4AOZ A;  3HZA A;  1SMC A;  1DUD A;  1OGH A;  1PKK A;  1MQ7 A;  3TPY A;  3ZF2 A;  4B0H A;  1SM8 A;  2ZDC A;  2HRM A;  1RNJ A;  1DUN A;  4WRK A;  3ZF6 A;  3TQ5 A;  3HHQ A;  3MBQ A;  4A6A A;  2YZJ A;  3ZF1 A;  2XX6 A;  2PC5 A;  2D4M A;  1PKH A;  2D4N A;  3TS6 A;  3T64 A;  5EDD A;  1F7R A;  3MDX A;  3GF0 A;  4APZ 1;  3TSL A;  3ZF4 A;  1VYQ A;  2BT1 A;  2D4L A;  2OKE A;  1SIX A;  4AOO A;  2WE0 A;  3TRN A;  3C2T A;  1RN8 A;  4XJC A;  4OOQ A;  2QXX A;  2HXD A;  1SYL A;  4LHR A;  3H6D A;  1F7P A;  3TQ3 A;  3TPS A;  2WE3 A;  2WE2 A;  2BAZ A;  2PY4 A;  1SNF A;  1F7O A;  1F7N A;  3I93 A;  4OOP A;  2BSY A;  4AO5 A;  1F7D A;  1EU5 A;  1Q5H A;  1DUT A;  5ECT A;  3T70 A;  2XCD A;  1SLH A;  2HXB A;  5F9K A;  3LOJ A;  3ECY A;  3ZEZ A;  3TRL A;  2J4Q A;  4GK6 A;  3TP1 A;  3TPN A;  1PKJ A;  3P48 A;  4GCY A;  1SEH A;  2HR6 A;  3TQZ A;  3KM3 A;  2Y8C A;  2XY3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.