4DJCA

1.35 a crystal structure of the nav1.5 diii-iv-ca/cam complex
Total Genus 61

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
151
structure length
151
Chain Sequence
NAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
2040608010012014014012010080604020
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (-1-4)AH2 (7-20)TI1 (21-24)EMPTYAH3 (30-40)AH5 (66-93)TI2 (57-60)S2 (64-65)TI3 (94-97)S3 (100-101)AH6 (103-113)AH8 (139-146)TI4 (130-133)S4 (137-138)S1 (27-28)AH7 (119-129)AH4 (46-56)Updating...
connected with : NaN
molecule tags Calcium-binding protein
source organism Homo sapiens
publication title Crystallographic basis for calcium regulation of sodium channels.
pubmed doi rcsb
molecule keywords Calmodulin
total genus 61
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2012-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13499 EF-hand_7 EF-hand domain pair
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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