4IN7H

(m)l214n mutant of the rhodobacter sphaeroides reaction center
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Role of Rhodobacter sphaeroides photosynthetic reaction center residue M214 in the composition, absorbance properties, and conformations of H(A) and B(A) cofactors.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein H chain
total genus 59
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2013-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 4in7H02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 4in7H01
1R2CH 1JGYH 1DV6H 2UX3H 2UWWH 1E6DH 7PRCH 3ZUMH 1FNQH 2HJ6H 3V3YH 3D38H 4TQQH 1RG5H 2JBLH 2UWUH 2HHKH 1RZZH 3PRCH 3T6EH 2PRCH 1JGZH 1MPSH 1RGNH 2JJ0H 1JGWH 1PCRH 3DTSH 3DSYH 2UWSH 1S00H 2UXLH 3ZUWH 5PRCH 4IN7H 2UWTH 2GMRH 3DTAH 1YF6H 2GNUH 4IN5H 5LRIH 3DU3H 3DUQH 1DV3H 1KBYH 4HBHH 3V3ZH 3DU2H 2BNSC 2HITH 4LWYH 1FNPH 1K6NH 1QOVH 2HG3H 1JH0H 2HH1H 1PRCH 3I4DH 1RY5H 1YSTH 2UXMH 1PSSH 1PSTH 3T6DH 1DS8H 3WMMH 1RQKH 2WJNH 1DXRH 1AIGH 1UMXH 1L9JH 2RCRH 4N7LH 2UWVH 4IN6H 4N7KH 2I5NH 2UXKH 1RVJH 1F6NH 2HG9H 4CASD 5LSEH 1E14H 2UX4H 6PRCH 2J8DH 1M3XH 1L9BH 3DTRH 1AIJH 2UXJH 2WJMH 1K6LH 2WX5H 2X5VH 2BNPC 1JGXH 2BOZH 1RZHH 1OGVH 4H99H 1EYSH 2J8CH 2JIYH 4H9LH 4HBJH 1VRNH 3G7FH 4RCRH 2UX5H 2X5UH
chains in the Genus database with same CATH superfamily
1R2CH 1JGYH 1DV6H 2UX3H 2UWWH 1E6DH 7PRCH 3ZUMH 1FNQH 2HJ6H 3V3YH 3D38H 4TQQH 1RG5H 2JBLH 2UWUH 2HHKH 1RZZH 3PRCH 3T6EH 2PRCH 1JGZH 1MPSH 1RGNH 2JJ0H 1JGWH 1PCRH 3DTSH 3DSYH 2UWSH 1S00H 2UXLH 3ZUWH 5PRCH 4IN7H 2UWTH 2GMRH 3DTAH 1YF6H 2GNUH 4IN5H 5LRIH 3DU3H 3DUQH 1DV3H 1KBYH 4HBHH 3V3ZH 3DU2H 2BNSC 2HITH 4LWYH 1FNPH 1K6NH 1QOVH 2HG3H 1JH0H 2HH1H 1PRCH 3I4DH 1RY5H 1YSTH 2UXMH 1PSSH 1PSTH 3T6DH 1DS8H 3WMMH 1RQKH 2WJNH 1DXRH 1AIGH 1UMXH 1L9JH 2RCRH 4N7LH 2UWVH 4IN6H 4N7KH 2I5NH 2UXKH 1RVJH 1F6NH 2HG9H 4CASD 5LSEH 1E14H 2UX4H 6PRCH 2J8DH 1M3XH 1L9BH 3DTRH 1AIJH 2UXJH 2WJMH 1K6LH 2WX5H 2X5VH 2BNPC 1JGXH 2BOZH 1RZHH 1OGVH 4H99H 1EYSH 2J8CH 2JIYH 4H9LH 4HBJH 1VRNH 3G7FH 4RCRH 2UX5H 2X5UH
chains in the Genus database with same CATH topology
1R2CH 1JGYH 1DV6H 2UX3H 2UWWH 1E6DH 7PRCH 3ZUMH 1FNQH 2HJ6H 3V3YH 3D38H 4TQQH 1RG5H 2JBLH 2UWUH 2HHKH 1RZZH 3PRCH 3T6EH 2PRCH 1JGZH 1MPSH 1RGNH 2JJ0H 1JGWH 1PCRH 3DTSH 3DSYH 2UWSH 1S00H 2UXLH 3ZUWH 5PRCH 4IN7H 2UWTH 2GMRH 3DTAH 1YF6H 2GNUH 4IN5H 5LRIH 3DU3H 3DUQH 1DV3H 1KBYH 4HBHH 3V3ZH 3DU2H 2BNSC 2HITH 4LWYH 1FNPH 1K6NH 1QOVH 2HG3H 1JH0H 2HH1H 1PRCH 3I4DH 1RY5H 1YSTH 2UXMH 1PSSH 1PSTH 3T6DH 1DS8H 3WMMH 1RQKH 2WJNH 1DXRH 1AIGH 1UMXH 1L9JH 2RCRH 4N7LH 2UWVH 4IN6H 4N7KH 2I5NH 2UXKH 1RVJH 1F6NH 2HG9H 4CASD 5LSEH 1E14H 2UX4H 6PRCH 2J8DH 1M3XH 1L9BH 3DTRH 1AIJH 2UXJH 2WJMH 1K6LH 2WX5H 2X5VH 2BNPC 1JGXH 2BOZH 1RZHH 1OGVH 4H99H 1EYSH 2J8CH 2JIYH 4H9LH 4HBJH 1VRNH 3G7FH 4RCRH 2UX5H 2X5UH
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1R2C H;  1JGY H;  1DV6 H;  2UX3 H;  2UWW H;  1E6D H;  7PRC H;  3ZUM H;  1FNQ H;  2HJ6 H;  3V3Y H;  3D38 H;  4TQQ H;  1RG5 H;  2JBL H;  2UWU H;  2HHK H;  1RZZ H;  3PRC H;  3T6E H;  2PRC H;  1JGZ H;  1MPS H;  1RGN H;  2JJ0 H;  1JGW H;  1PCR H;  3DTS H;  3DSY H;  2UWS H;  1S00 H;  2UXL H;  3ZUW H;  5PRC H;  4IN7 H;  2UWT H;  2GMR H;  3DTA H;  1YF6 H;  2GNU H;  4IN5 H;  5LRI H;  3DU3 H;  3DUQ H;  1DV3 H;  1KBY H;  4HBH H;  3V3Z H;  3DU2 H;  2BNS C;  2HIT H;  4LWY H;  1FNP H;  1K6N H;  1QOV H;  2HG3 H;  1JH0 H;  2HH1 H;  1PRC H;  3I4D H;  1RY5 H;  1YST H;  2UXM H;  1PSS H;  1PST H;  3T6D H;  1DS8 H;  3WMM H;  1RQK H;  2WJN H;  1DXR H;  1AIG H;  1UMX H;  1L9J H;  2RCR H;  4N7L H;  2UWV H;  4IN6 H;  4N7K H;  2I5N H;  2UXK H;  1RVJ H;  1F6N H;  2HG9 H;  4CAS D;  5LSE H;  1E14 H;  2UX4 H;  6PRC H;  2J8D H;  1M3X H;  1L9B H;  3DTR H;  1AIJ H;  2UXJ H;  2WJM H;  1K6L H;  2WX5 H;  2X5V H;  2BNP C;  1JGX H;  2BOZ H;  1RZH H;  1OGV H;  4H99 H;  1EYS H;  2J8C H;  2JIY H;  4H9L H;  4HBJ H;  1VRN H;  3G7F H;  4RCR H;  2UX5 H;  2X5U H; 
#chains in the Genus database with same CATH topology
 1R2C H;  1JGY H;  1DV6 H;  2UX3 H;  2UWW H;  1E6D H;  7PRC H;  3ZUM H;  1FNQ H;  2HJ6 H;  3V3Y H;  3D38 H;  4TQQ H;  1RG5 H;  2JBL H;  2UWU H;  2HHK H;  1RZZ H;  3PRC H;  3T6E H;  2PRC H;  1JGZ H;  1MPS H;  1RGN H;  2JJ0 H;  1JGW H;  1PCR H;  3DTS H;  3DSY H;  2UWS H;  1S00 H;  2UXL H;  3ZUW H;  5PRC H;  4IN7 H;  2UWT H;  2GMR H;  3DTA H;  1YF6 H;  2GNU H;  4IN5 H;  5LRI H;  3DU3 H;  3DUQ H;  1DV3 H;  1KBY H;  4HBH H;  3V3Z H;  3DU2 H;  2BNS C;  2HIT H;  4LWY H;  1FNP H;  1K6N H;  1QOV H;  2HG3 H;  1JH0 H;  2HH1 H;  1PRC H;  3I4D H;  1RY5 H;  1YST H;  2UXM H;  1PSS H;  1PST H;  3T6D H;  1DS8 H;  3WMM H;  1RQK H;  2WJN H;  1DXR H;  1AIG H;  1UMX H;  1L9J H;  2RCR H;  4N7L H;  2UWV H;  4IN6 H;  4N7K H;  2I5N H;  2UXK H;  1RVJ H;  1F6N H;  2HG9 H;  4CAS D;  5LSE H;  1E14 H;  2UX4 H;  6PRC H;  2J8D H;  1M3X H;  1L9B H;  3DTR H;  1AIJ H;  2UXJ H;  2WJM H;  1K6L H;  2WX5 H;  2X5V H;  2BNP C;  1JGX H;  2BOZ H;  1RZH H;  1OGV H;  4H99 H;  1EYS H;  2J8C H;  2JIY H;  4H9L H;  4HBJ H;  1VRN H;  3G7F H;  4RCR H;  2UX5 H;  2X5U H; 
#chains in the Genus database with same CATH homology
 1R2C H;  1JGY H;  1DV6 H;  2UX3 H;  2UWW H;  1E6D H;  7PRC H;  3ZUM H;  1FNQ H;  2HJ6 H;  3V3Y H;  3D38 H;  4TQQ H;  1RG5 H;  2JBL H;  2UWU H;  2HHK H;  1RZZ H;  3PRC H;  3T6E H;  2PRC H;  1JGZ H;  1MPS H;  1RGN H;  2JJ0 H;  1JGW H;  1PCR H;  3DTS H;  3DSY H;  2UWS H;  1S00 H;  2UXL H;  3ZUW H;  5PRC H;  4IN7 H;  2UWT H;  2GMR H;  3DTA H;  1YF6 H;  2GNU H;  4IN5 H;  5LRI H;  3DU3 H;  3DUQ H;  1DV3 H;  1KBY H;  4HBH H;  3V3Z H;  3DU2 H;  2BNS C;  2HIT H;  4LWY H;  1FNP H;  1K6N H;  1QOV H;  2HG3 H;  1JH0 H;  2HH1 H;  1PRC H;  3I4D H;  1RY5 H;  1YST H;  2UXM H;  1PSS H;  1PST H;  3T6D H;  1DS8 H;  3WMM H;  1RQK H;  2WJN H;  1DXR H;  1AIG H;  1UMX H;  1L9J H;  2RCR H;  4N7L H;  2UWV H;  4IN6 H;  4N7K H;  2I5N H;  2UXK H;  1RVJ H;  1F6N H;  2HG9 H;  4CAS D;  5LSE H;  1E14 H;  2UX4 H;  6PRC H;  2J8D H;  1M3X H;  1L9B H;  3DTR H;  1AIJ H;  2UXJ H;  2WJM H;  1K6L H;  2WX5 H;  2X5V H;  2BNP C;  1JGX H;  2BOZ H;  1RZH H;  1OGV H;  4H99 H;  1EYS H;  2J8C H;  2JIY H;  4H9L H;  4HBJ H;  1VRN H;  3G7F H;  4RCR H;  2UX5 H;  2X5U H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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