4LEA | Genus

Total Genus 61

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	61
sequence length	254
structure length	254
Chain Sequence	ASSLAPRQVIRDGQFITSPNGKYKLVMQADGNLVLYEDGTKPIWNTTPVGPGAKAVMEFNLNLYNKAGQVAWSSNVYTAYLFEEFKDEAYLNLQDDGDFGIFSDEAKWGSIVLSRPEVGVKNKIIPTGTVMVPGTEYINGNYRLAFQGDGNLVIYQINPQVVIWATYTMGADRAVVQEDGNFVIYKGTTALWHTHTATGMPAYLKFTNTGKLFLSQPTLLWTLKRGSLSKPPKVIPGQHGPLDTTPIWSWPHDY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 254 atoms

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254 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Pseudomonas aeruginosa
publication title	Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor. pubmed doi rcsb
molecule keywords	Pyocin L1
total genus	61
structure length	254
sequence length	254
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-06-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.20	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Agglutinin, subunit A	4leaA02
2.90.10.30	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Agglutinin, subunit A	4leaA01

4OIZA 3M7JA 4LEAA 4OKCA 3M7HA 4LEDA 4GC1A 4GC2A 4LE7A 4OITA
chains in the Genus database with same CATH superfamily

5T1XA 5T20A 4GC1A 3DZWA 3R0EB 4GC2A 1KJ1D 1BWUA 3A0CA 1B2PA 4TKCA 5D9ZA 4OIZA 3MEZB 5D5GB 3A0EA 5J76A 4OITA 1XD5A 2D04B 1BWUD 1NPLA 4LEAA 4OKCA 3M7HA 5T1XB 5T20B 3R0EA 4H3OA 1BWUQ 2DPFA 4LE7A 1JPCA 1NIVA 1BWUP 4PDTA 3M7JA 3MEZA 5D9ZB 5D5GA 1XD6A 4LEDA 1KJ1A 1DLPA 3A0DA 1MSAA 2D04A 5J76B
chains in the Genus database with same CATH topology

4OIZA 3M7JA 4LEAA 4OKCA 3M7HA 4LEDA 4GC1A 4GC2A 4LE7A 4OITA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4OIZ A;  3M7J A;  4LEA A;  4OKC A;  3M7H A;  4LED A;  4GC1 A;  4GC2 A;  4LE7 A;  4OIT A; 
#chains in the Genus database with same CATH topology
 5T1X A;  5T20 A;  4GC1 A;  3DZW A;  3R0E B;  4GC2 A;  1KJ1 D;  1BWU A;  3A0C A;  1B2P A;  4TKC A;  5D9Z A;  4OIZ A;  3MEZ B;  5D5G B;  3A0E A;  5J76 A;  4OIT A;  1XD5 A;  2D04 B;  1BWU D;  1NPL A;  4LEA A;  4OKC A;  3M7H A;  5T1X B;  5T20 B;  3R0E A;  4H3O A;  1BWU Q;  2DPF A;  4LE7 A;  1JPC A;  1NIV A;  1BWU P;  4PDT A;  3M7J A;  3MEZ A;  5D9Z B;  5D5G A;  1XD6 A;  4LED A;  1KJ1 A;  1DLP A;  3A0D A;  1MSA A;  2D04 A;  5J76 B; 
#chains in the Genus database with same CATH homology
 4OIZ A;  3M7J A;  4LEA A;  4OKC A;  3M7H A;  4LED A;  4GC1 A;  4GC2 A;  4LE7 A;  4OIT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LEAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN