The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.
Total Genus |
0
|
sequence length |
21
|
structure length |
20
|
Chain Sequence |
AGAACGUCGUGAGACAGUCG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase/rna
|
| molecule keywords |
Ribosomal large subunit pseudouridine synthase B
|
| publication title |
The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| structure length |
20
|
| sequence length |
21
|
| RNA BGSU Site |
RNA BGSU Site Entry
|
| chains with identical sequence |
F
|
| ec nomenclature | |
| pdb deposition date | 2013-06-28 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
