4O1Y | Genus

Total Genus 39

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	124
structure length	124
Chain Sequence	ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
publication title	Crystal structure of Porcine Pancreatic Phospholipase A2 in complex with 1-Naphthaleneacetic acid rcsb
molecule keywords	Phospholipase A2, major isoenzyme
total genus	39
structure length	124
sequence length	124
ec nomenclature	ec 3.1.1.4: Phospholipase A(2).
pdb deposition date	2013-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00068	Phospholip_A2_1	Phospholipase A2

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.90.10	Mainly Alpha	Up-down Bundle	Phospholipase A2	Phospholipase A2 domain	4o1yA00

3HZDA 1G2XA 1DCYA 2BP2A 2QOGA 1BK9A 1N28A 3P2PA 4QF7A 1O2EA 3CXIA 2OUBA 3T0RA 3G8FA 1MH8A 3DIHA 1CL5A 1BBCA 2BD1A 1KVXA 1OZ6A 3L30A 3U8IA 4DBKA 1MKUA 3JR8A 1TK4A 1P2PA 4QMCA 2OSNA 3BP2A 1YXLA 1Y75A 2ZBHA 1CLPA 1PSJA 1Q7AA 4GLDA 1ZWPA 1UMVX 1VAPA 1N29A 2FNXA 2ZP4A 2QOGB 3G8HA 4UY1A 2OK9A 4WTBA 1IRBA 1IT5A 2QHWA 1S8HA 2AZZA 2OTFA 1PO8A 1FAZA 2DPZA 4G5IA 1POEA 1XXWA 1U73A 4HMBA 1QLLA 4YV5A 4NTXC 1Q5TA 1S6BB 1TJ9A 4QEMA 3G8GA 3VC0A 4AUPA 1XXSA 1DPYA 1G4IA 1LE6A 2WG8A 1OZYA 1SV9A 4GFYA 1POAA 4RFPA 4QGDA 1AE7A 1SV3A 1Y6OA 5G3NA 3U8HA 3GCIA 2WG7A 1G0ZA 2Q1PA 1MH7A 2ZP5A 1JIAA 3FVJA 1O3WA 3IQ3A 1XXWB 1TC8A 4NTWC 1PA0A 2QHEA 2OTHA 1FXFA 2NOTA 2H4CA 1AYPA 1GH4A 2PH4A 1VL9A 1BJJA 2QU9A 2WG8B 1CEHA 1OQSA 1ZYXA 2PHIA 2PWSA 3O4MA 3NJUA 1Q6VA 1KVYA 2B01A 2H8IA 1MH2A 1B4WA 5P2PA 1BPQA 3CYLA 4DCFA 1S6BA 1FB2A 2PB8A 4FGAA 1C1JA 1Y6PA 1DB5A 2OSHA 1JQ9A 2H4CB 3JTIA 3JQ5A 1BP2A 4HG9A 1LN8A 1POBA 4EIXA 1OQSB 1OXLA 1POCA 4H0SA 1T37A 1PPAA 1PC9A 1OWSA 1MH2B 2PVTA 1JLTA 1TP2A 1BUNA 4P2PA 3CBIA 2B00A 4QERA 2BPPA 1C74A 1IT4A 2DO2A 1MKVA 2PYCA 1KVOA 1OYFA 1SFWA 1SZ8A 4NTYC 2WQ5A 2QUEA 1J1AA 2ARMA 1SKGA 1SQZA 2PMJA 1OWSB 1FE5A 4BP2A 1MG6A 1GP7A 2RD4B 1AOKA 3Q4YA 1JLTB 5G3MA 2OQDA 1PSHA 2OYFA 1LE7A 1M8TA 3ELOA 1YXHA 1MKSA 2I0UA 1ZR8A 1TG1A 1KVWA 3U8DA 1TH6A 3U8BA 1OYFB 1GODA 3JQLA 1KQUA 2BCHA 3QLMA 1UNEA 2B17A 2B96A 2GNSA 1DB4A 1MKTA 3I03A 4O1YA 3VBZA 1PODA 3HSWA 2B03A 1VPIA 1VIPA 1AOKB 3BJWA 4K09A 1A3FA 2QVDA 1M8RA 2ZP3A 3V9MA 1L8SA 3HZWA 3FG5A 1BVMA 1U4JA 1ZL7A 1SFVA 1A3DA 1TG4A 4K06A 1HN4A 1VKQA 4E4CA 1FX9A 1TD7A 3I3HA 4QF8A 1S8IA 1FV0A 1MF4A 2RD4A 2QHDA 1GMZA 3UX7A 1OXRA 1PISA 1KP4A 1RGBA 1FDKA 1M8SA 1Y4LA 1PIRA 2WG9A 2Q2JA 1TDVA 3I3IA 3R0LD 1PWOA 3QNLA 2BAXA 1PP2L 4KF3A 1SXKA 2OLIA 1IJLA 1Z76A 2O1NA 3FO7A 1Y75B 2G58A 2AZYA 1A2AA 3H1XA 3FVIA 2B04A 1P7OA 1TGMA 1KPMA 2AOZA 1TJKA 1ZLBA 3OSHA 1ZM6A 1Y38A 4YZ7A 1S8GA 1MC2A 1LWBA 1JQ8A 3MLMA 4YU7A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3HZD A;  1G2X A;  1DCY A;  2BP2 A;  2QOG A;  1BK9 A;  1N28 A;  3P2P A;  4QF7 A;  1O2E A;  3CXI A;  2OUB A;  3T0R A;  3G8F A;  1MH8 A;  3DIH A;  1CL5 A;  1BBC A;  2BD1 A;  1KVX A;  1OZ6 A;  3L30 A;  3U8I A;  4DBK A;  1MKU A;  3JR8 A;  1TK4 A;  1P2P A;  4QMC A;  2OSN A;  3BP2 A;  1YXL A;  1Y75 A;  2ZBH A;  1CLP A;  1PSJ A;  1Q7A A;  4GLD A;  1ZWP A;  1UMV X;  1VAP A;  1N29 A;  2FNX A;  2ZP4 A;  2QOG B;  3G8H A;  4UY1 A;  2OK9 A;  4WTB A;  1IRB A;  1IT5 A;  2QHW A;  1S8H A;  2AZZ A;  2OTF A;  1PO8 A;  1FAZ A;  2DPZ A;  4G5I A;  1POE A;  1XXW A;  1U73 A;  4HMB A;  1QLL A;  4YV5 A;  4NTX C;  1Q5T A;  1S6B B;  1TJ9 A;  4QEM A;  3G8G A;  3VC0 A;  4AUP A;  1XXS A;  1DPY A;  1G4I A;  1LE6 A;  2WG8 A;  1OZY A;  1SV9 A;  4GFY A;  1POA A;  4RFP A;  4QGD A;  1AE7 A;  1SV3 A;  1Y6O A;  5G3N A;  3U8H A;  3GCI A;  2WG7 A;  1G0Z A;  2Q1P A;  1MH7 A;  2ZP5 A;  1JIA A;  3FVJ A;  1O3W A;  3IQ3 A;  1XXW B;  1TC8 A;  4NTW C;  1PA0 A;  2QHE A;  2OTH A;  1FXF A;  2NOT A;  2H4C A;  1AYP A;  1GH4 A;  2PH4 A;  1VL9 A;  1BJJ A;  2QU9 A;  2WG8 B;  1CEH A;  1OQS A;  1ZYX A;  2PHI A;  2PWS A;  3O4M A;  3NJU A;  1Q6V A;  1KVY A;  2B01 A;  2H8I A;  1MH2 A;  1B4W A;  5P2P A;  1BPQ A;  3CYL A;  4DCF A;  1S6B A;  1FB2 A;  2PB8 A;  4FGA A;  1C1J A;  1Y6P A;  1DB5 A;  2OSH A;  1JQ9 A;  2H4C B;  3JTI A;  3JQ5 A;  1BP2 A;  4HG9 A;  1LN8 A;  1POB A;  4EIX A;  1OQS B;  1OXL A;  1POC A;  4H0S A;  1T37 A;  1PPA A;  1PC9 A;  1OWS A;  1MH2 B;  2PVT A;  1JLT A;  1TP2 A;  1BUN A;  4P2P A;  3CBI A;  2B00 A;  4QER A;  2BPP A;  1C74 A;  1IT4 A;  2DO2 A;  1MKV A;  2PYC A;  1KVO A;  1OYF A;  1SFW A;  1SZ8 A;  4NTY C;  2WQ5 A;  2QUE A;  1J1A A;  2ARM A;  1SKG A;  1SQZ A;  2PMJ A;  1OWS B;  1FE5 A;  4BP2 A;  1MG6 A;  1GP7 A;  2RD4 B;  1AOK A;  3Q4Y A;  1JLT B;  5G3M A;  2OQD A;  1PSH A;  2OYF A;  1LE7 A;  1M8T A;  3ELO A;  1YXH A;  1MKS A;  2I0U A;  1ZR8 A;  1TG1 A;  1KVW A;  3U8D A;  1TH6 A;  3U8B A;  1OYF B;  1GOD A;  3JQL A;  1KQU A;  2BCH A;  3QLM A;  1UNE A;  2B17 A;  2B96 A;  2GNS A;  1DB4 A;  1MKT A;  3I03 A;  4O1Y A;  3VBZ A;  1POD A;  3HSW A;  2B03 A;  1VPI A;  1VIP A;  1AOK B;  3BJW A;  4K09 A;  1A3F A;  2QVD A;  1M8R A;  2ZP3 A;  3V9M A;  1L8S A;  3HZW A;  3FG5 A;  1BVM A;  1U4J A;  1ZL7 A;  1SFV A;  1A3D A;  1TG4 A;  4K06 A;  1HN4 A;  1VKQ A;  4E4C A;  1FX9 A;  1TD7 A;  3I3H A;  4QF8 A;  1S8I A;  1FV0 A;  1MF4 A;  2RD4 A;  2QHD A;  1GMZ A;  3UX7 A;  1OXR A;  1PIS A;  1KP4 A;  1RGB A;  1FDK A;  1M8S A;  1Y4L A;  1PIR A;  2WG9 A;  2Q2J A;  1TDV A;  3I3I A;  3R0L D;  1PWO A;  3QNL A;  2BAX A;  1PP2 L;  4KF3 A;  1SXK A;  2OLI A;  1IJL A;  1Z76 A;  2O1N A;  3FO7 A;  1Y75 B;  2G58 A;  2AZY A;  1A2A A;  3H1X A;  3FVI A;  2B04 A;  1P7O A;  1TGM A;  1KPM A;  2AOZ A;  1TJK A;  1ZLB A;  3OSH A;  1ZM6 A;  1Y38 A;  4YZ7 A;  1S8G A;  1MC2 A;  1LWB A;  1JQ8 A;  3MLM A;  4YU7 A; 
#chains in the Genus database with same CATH topology
 3HZD A;  1G2X A;  1DCY A;  2BP2 A;  2QOG A;  1BK9 A;  1N28 A;  3P2P A;  4QF7 A;  1O2E A;  3CXI A;  2OUB A;  3T0R A;  3G8F A;  1MH8 A;  3DIH A;  1CL5 A;  1BBC A;  2BD1 A;  1KVX A;  1OZ6 A;  3L30 A;  3U8I A;  4DBK A;  1MKU A;  3JR8 A;  1TK4 A;  1P2P A;  4QMC A;  2OSN A;  3BP2 A;  1YXL A;  1Y75 A;  2ZBH A;  1CLP A;  1PSJ A;  1Q7A A;  4GLD A;  1ZWP A;  1UMV X;  1VAP A;  1N29 A;  2FNX A;  2ZP4 A;  2QOG B;  3G8H A;  4UY1 A;  2OK9 A;  4WTB A;  1IRB A;  1IT5 A;  2QHW A;  1S8H A;  2AZZ A;  2OTF A;  1PO8 A;  1FAZ A;  2DPZ A;  4G5I A;  1POE A;  1XXW A;  1U73 A;  4HMB A;  1QLL A;  4YV5 A;  4NTX C;  1Q5T A;  1S6B B;  1TJ9 A;  4QEM A;  3G8G A;  3VC0 A;  4AUP A;  1XXS A;  1DPY A;  1G4I A;  1LE6 A;  2WG8 A;  1OZY A;  1SV9 A;  4GFY A;  1POA A;  4RFP A;  4QGD A;  1AE7 A;  1SV3 A;  1Y6O A;  5G3N A;  3U8H A;  3GCI A;  2WG7 A;  1G0Z A;  2Q1P A;  1MH7 A;  2ZP5 A;  1JIA A;  3FVJ A;  1O3W A;  3IQ3 A;  1XXW B;  1TC8 A;  4NTW C;  1PA0 A;  2QHE A;  2OTH A;  1FXF A;  2NOT A;  2H4C A;  1AYP A;  1GH4 A;  2PH4 A;  1VL9 A;  1BJJ A;  2QU9 A;  2WG8 B;  1CEH A;  1OQS A;  1ZYX A;  2PHI A;  2PWS A;  3O4M A;  3NJU A;  1Q6V A;  1KVY A;  2B01 A;  2H8I A;  1MH2 A;  1B4W A;  5P2P A;  1BPQ A;  3CYL A;  4DCF A;  1S6B A;  1FB2 A;  2PB8 A;  4FGA A;  1C1J A;  1Y6P A;  1DB5 A;  2OSH A;  1JQ9 A;  2H4C B;  3JTI A;  3JQ5 A;  1BP2 A;  4HG9 A;  1LN8 A;  1POB A;  4EIX A;  1OQS B;  1OXL A;  1POC A;  4H0S A;  1T37 A;  1PPA A;  1PC9 A;  1OWS A;  1MH2 B;  2PVT A;  1JLT A;  1TP2 A;  1BUN A;  4P2P A;  3CBI A;  2B00 A;  4QER A;  2BPP A;  1C74 A;  1IT4 A;  2DO2 A;  1MKV A;  2PYC A;  1KVO A;  1OYF A;  1SFW A;  1SZ8 A;  4NTY C;  2WQ5 A;  2QUE A;  1J1A A;  2ARM A;  1SKG A;  1SQZ A;  2PMJ A;  1OWS B;  1FE5 A;  4BP2 A;  1MG6 A;  1GP7 A;  2RD4 B;  1AOK A;  3Q4Y A;  1JLT B;  5G3M A;  2OQD A;  1PSH A;  2OYF A;  1LE7 A;  1M8T A;  3ELO A;  1YXH A;  1MKS A;  2I0U A;  1ZR8 A;  1TG1 A;  1KVW A;  3U8D A;  1TH6 A;  3U8B A;  1OYF B;  1GOD A;  3JQL A;  1KQU A;  2BCH A;  3QLM A;  1UNE A;  2B17 A;  2B96 A;  2GNS A;  1DB4 A;  1MKT A;  3I03 A;  4O1Y A;  3VBZ A;  1POD A;  3HSW A;  2B03 A;  1VPI A;  1VIP A;  1AOK B;  3BJW A;  4K09 A;  1A3F A;  2QVD A;  1M8R A;  2ZP3 A;  3V9M A;  1L8S A;  3HZW A;  3FG5 A;  1BVM A;  1U4J A;  1ZL7 A;  1SFV A;  1A3D A;  1TG4 A;  4K06 A;  1HN4 A;  1VKQ A;  4E4C A;  1FX9 A;  1TD7 A;  3I3H A;  4QF8 A;  1S8I A;  1FV0 A;  1MF4 A;  2RD4 A;  2QHD A;  1GMZ A;  3UX7 A;  1OXR A;  1PIS A;  1KP4 A;  1RGB A;  1FDK A;  1M8S A;  1Y4L A;  1PIR A;  2WG9 A;  2Q2J A;  1TDV A;  3I3I A;  3R0L D;  1PWO A;  3QNL A;  2BAX A;  1PP2 L;  4KF3 A;  1SXK A;  2OLI A;  1IJL A;  1Z76 A;  2O1N A;  3FO7 A;  1Y75 B;  2G58 A;  2AZY A;  1A2A A;  3H1X A;  3FVI A;  2B04 A;  1P7O A;  1TGM A;  1KPM A;  2AOZ A;  1TJK A;  1ZLB A;  3OSH A;  1ZM6 A;  1Y38 A;  4YZ7 A;  1S8G A;  1MC2 A;  1LWB A;  1JQ8 A;  3MLM A;  4YU7 A; 
#chains in the Genus database with same CATH homology
 3HZD A;  1G2X A;  1DCY A;  2BP2 A;  2QOG A;  1BK9 A;  1N28 A;  3P2P A;  4QF7 A;  1O2E A;  3CXI A;  2OUB A;  3T0R A;  3G8F A;  1MH8 A;  3DIH A;  1CL5 A;  1BBC A;  2BD1 A;  1KVX A;  1OZ6 A;  3L30 A;  3U8I A;  4DBK A;  1MKU A;  3JR8 A;  1TK4 A;  1P2P A;  4QMC A;  2OSN A;  3BP2 A;  1YXL A;  1Y75 A;  2ZBH A;  1CLP A;  1PSJ A;  1Q7A A;  4GLD A;  1ZWP A;  1UMV X;  1VAP A;  1N29 A;  2FNX A;  2ZP4 A;  2QOG B;  3G8H A;  4UY1 A;  2OK9 A;  4WTB A;  1IRB A;  1IT5 A;  2QHW A;  1S8H A;  2AZZ A;  2OTF A;  1PO8 A;  1FAZ A;  2DPZ A;  4G5I A;  1POE A;  1XXW A;  1U73 A;  4HMB A;  1QLL A;  4YV5 A;  4NTX C;  1Q5T A;  1S6B B;  1TJ9 A;  4QEM A;  3G8G A;  3VC0 A;  4AUP A;  1XXS A;  1DPY A;  1G4I A;  1LE6 A;  2WG8 A;  1OZY A;  1SV9 A;  4GFY A;  1POA A;  4RFP A;  4QGD A;  1AE7 A;  1SV3 A;  1Y6O A;  5G3N A;  3U8H A;  3GCI A;  2WG7 A;  1G0Z A;  2Q1P A;  1MH7 A;  2ZP5 A;  1JIA A;  3FVJ A;  1O3W A;  3IQ3 A;  1XXW B;  1TC8 A;  4NTW C;  1PA0 A;  2QHE A;  2OTH A;  1FXF A;  2NOT A;  2H4C A;  1AYP A;  1GH4 A;  2PH4 A;  1VL9 A;  1BJJ A;  2QU9 A;  2WG8 B;  1CEH A;  1OQS A;  1ZYX A;  2PHI A;  2PWS A;  3O4M A;  3NJU A;  1Q6V A;  1KVY A;  2B01 A;  2H8I A;  1MH2 A;  1B4W A;  5P2P A;  1BPQ A;  3CYL A;  4DCF A;  1S6B A;  1FB2 A;  2PB8 A;  4FGA A;  1C1J A;  1Y6P A;  1DB5 A;  2OSH A;  1JQ9 A;  2H4C B;  3JTI A;  3JQ5 A;  1BP2 A;  4HG9 A;  1LN8 A;  1POB A;  4EIX A;  1OQS B;  1OXL A;  1POC A;  4H0S A;  1T37 A;  1PPA A;  1PC9 A;  1OWS A;  1MH2 B;  2PVT A;  1JLT A;  1TP2 A;  1BUN A;  4P2P A;  3CBI A;  2B00 A;  4QER A;  2BPP A;  1C74 A;  1IT4 A;  2DO2 A;  1MKV A;  2PYC A;  1KVO A;  1OYF A;  1SFW A;  1SZ8 A;  4NTY C;  2WQ5 A;  2QUE A;  1J1A A;  2ARM A;  1SKG A;  1SQZ A;  2PMJ A;  1OWS B;  1FE5 A;  4BP2 A;  1MG6 A;  1GP7 A;  2RD4 B;  1AOK A;  3Q4Y A;  1JLT B;  5G3M A;  2OQD A;  1PSH A;  2OYF A;  1LE7 A;  1M8T A;  3ELO A;  1YXH A;  1MKS A;  2I0U A;  1ZR8 A;  1TG1 A;  1KVW A;  3U8D A;  1TH6 A;  3U8B A;  1OYF B;  1GOD A;  3JQL A;  1KQU A;  2BCH A;  3QLM A;  1UNE A;  2B17 A;  2B96 A;  2GNS A;  1DB4 A;  1MKT A;  3I03 A;  4O1Y A;  3VBZ A;  1POD A;  3HSW A;  2B03 A;  1VPI A;  1VIP A;  1AOK B;  3BJW A;  4K09 A;  1A3F A;  2QVD A;  1M8R A;  2ZP3 A;  3V9M A;  1L8S A;  3HZW A;  3FG5 A;  1BVM A;  1U4J A;  1ZL7 A;  1SFV A;  1A3D A;  1TG4 A;  4K06 A;  1HN4 A;  1VKQ A;  4E4C A;  1FX9 A;  1TD7 A;  3I3H A;  4QF8 A;  1S8I A;  1FV0 A;  1MF4 A;  2RD4 A;  2QHD A;  1GMZ A;  3UX7 A;  1OXR A;  1PIS A;  1KP4 A;  1RGB A;  1FDK A;  1M8S A;  1Y4L A;  1PIR A;  2WG9 A;  2Q2J A;  1TDV A;  3I3I A;  3R0L D;  1PWO A;  3QNL A;  2BAX A;  1PP2 L;  4KF3 A;  1SXK A;  2OLI A;  1IJL A;  1Z76 A;  2O1N A;  3FO7 A;  1Y75 B;  2G58 A;  2AZY A;  1A2A A;  3H1X A;  3FVI A;  2B04 A;  1P7O A;  1TGM A;  1KPM A;  2AOZ A;  1TJK A;  1ZLB A;  3OSH A;  1ZM6 A;  1Y38 A;  4YZ7 A;  1S8G A;  1MC2 A;  1LWB A;  1JQ8 A;  3MLM A;  4YU7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4O1YA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations