4TKC | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	118
structure length	118
Chain Sequence	SYVHPYGSTLPENGVIGRGYALISDSGRVEFRVTDEGNIQLFLDDSRKLWSVDGKNASFVKMQTDGNCVGYDPNGTAVWHTATNGDDHPYNLVCQNDGNLVVYAKGGKAVWHTNTAVV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 118 atoms

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118 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Marasmius oreades
publication title	Structure of Japanese Marasmius oreades lectin complexed with mannose. rcsb
molecule keywords	Mannose recognizing lectin
total genus	28
structure length	118
sequence length	118
ec nomenclature
pdb deposition date	2014-05-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	4tkcA00

5D5GB 1XD5A 5J76B 1NPLA 1DLPA 1KJ1A 3A0CA 1NIVA 3DZWA 1BWUA 4TKCA 5D5GA 4PDTA 5J76A 4H3OA 5D9ZB 5T20B 3R0EB 3A0EA 2D04B 5T1XB 4GC1A 5D9ZA 3R0EA 3M7HA 1MSAA 3MEZB 5T20A 2D04A 5T1XA 3A0DA 3MEZA 2DPFA 1KJ1D 1BWUD 1XD6A 3M7JA 1B2PA 1BWUP 1JPCA 1BWUQ 4GC2A
chains in the Genus database with same CATH superfamily

5D5GB 1XD5A 5J76B 1NPLA 1DLPA 1KJ1A 3A0CA 1NIVA 3DZWA 1BWUA 4TKCA 4OITA 5D5GA 4PDTA 5J76A 4H3OA 5D9ZB 5T20B 3R0EB 3A0EA 2D04B 5T1XB 4GC1A 5D9ZA 3R0EA 3M7HA 1MSAA 3MEZB 5T20A 2D04A 4OKCA 5T1XA 4LE7A 3A0DA 3MEZA 4OIZA 2DPFA 1KJ1D 1BWUD 1XD6A 3M7JA 1B2PA 4LEAA 1BWUP 4LEDA 1JPCA 1BWUQ 4GC2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5D5G B;  1XD5 A;  5J76 B;  1NPL A;  1DLP A;  1KJ1 A;  3A0C A;  1NIV A;  3DZW A;  1BWU A;  4TKC A;  5D5G A;  4PDT A;  5J76 A;  4H3O A;  5D9Z B;  5T20 B;  3R0E B;  3A0E A;  2D04 B;  5T1X B;  4GC1 A;  5D9Z A;  3R0E A;  3M7H A;  1MSA A;  3MEZ B;  5T20 A;  2D04 A;  5T1X A;  3A0D A;  3MEZ A;  2DPF A;  1KJ1 D;  1BWU D;  1XD6 A;  3M7J A;  1B2P A;  1BWU P;  1JPC A;  1BWU Q;  4GC2 A; 
#chains in the Genus database with same CATH topology
 5D5G B;  1XD5 A;  5J76 B;  1NPL A;  1DLP A;  1KJ1 A;  3A0C A;  1NIV A;  3DZW A;  1BWU A;  4TKC A;  4OIT A;  5D5G A;  4PDT A;  5J76 A;  4H3O A;  5D9Z B;  5T20 B;  3R0E B;  3A0E A;  2D04 B;  5T1X B;  4GC1 A;  5D9Z A;  3R0E A;  3M7H A;  1MSA A;  3MEZ B;  5T20 A;  2D04 A;  4OKC A;  5T1X A;  4LE7 A;  3A0D A;  3MEZ A;  4OIZ A;  2DPF A;  1KJ1 D;  1BWU D;  1XD6 A;  3M7J A;  1B2P A;  4LEA A;  1BWU P;  4LED A;  1JPC A;  1BWU Q;  4GC2 A; 
#chains in the Genus database with same CATH homology
 5D5G B;  1XD5 A;  5J76 B;  1NPL A;  1DLP A;  1KJ1 A;  3A0C A;  1NIV A;  3DZW A;  1BWU A;  4TKC A;  5D5G A;  4PDT A;  5J76 A;  4H3O A;  5D9Z B;  5T20 B;  3R0E B;  3A0E A;  2D04 B;  5T1X B;  4GC1 A;  5D9Z A;  3R0E A;  3M7H A;  1MSA A;  3MEZ B;  5T20 A;  2D04 A;  5T1X A;  3A0D A;  3MEZ A;  2DPF A;  1KJ1 D;  1BWU D;  1XD6 A;  3M7J A;  1B2P A;  1BWU P;  1JPC A;  1BWU Q;  4GC2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4TKCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN