5AZSA

Crystal structure of a membrane protein from pseudomonas aeruginosa
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
443
structure length
430
Chain Sequence
CSMAPTYERPAAPVADSWSLDWKSFIVDAELRRLVDMALDNNRSLRQTLLDIEAARAQYRIQRADRVPGLNAAATGNRQRQPADLSAGNRSEVASSYQVGLALPEYELDLFGRVKSLTDAALQQYLASEEAARAARIALVAEVSQAYLSYDGALRRLALTRQTLVSREYSFALIDQRRAAGAATALDYQEALGLVEQARAEQERNLRQKQQAFNALVLLLGSDDAAQAIPRSPGQRPKLLQDIAPGTPSELIERRPDILAAEHRLRARNADIGAARAAFFPRISLTGSFGTSSAEMSGLFDGGSRSWSFLPTLTLPIFDGGRNRANLSLAEARKDSAVAAYEGTIQTAFREVADALAASDTLRREEKALRALANSSNEALKLAKARYESGVDNHLRYLDAQRSSFLNEIAFIDGSTQRQIALVDLFRALG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of OprN and OprJ, outer membrane factors of multidrug tripartite efflux pumps of Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Membrane protein
source organism Pseudomonas aeruginosa (strain atcc 15692 / pao1 / 1c / prs 101 / lmg 12228)
molecule keywords Outer membrane protein OprJ
total genus 143
structure length 430
sequence length 443
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2015-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02321 OEP Outer membrane efflux protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1600.10 Mainly Alpha Up-down Bundle Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 5azsA01
2.20.200.10 Mainly Beta Single Sheet Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 5azsA02
2VDDA 2WMZA 1EK9A 4MT0A 1TQQA 5AZPA 3D5KA 4K7RA 2XMNA 5BUNA 5AZSA 1WP1A 4K34A 2VDEA 4K7KA 5IUYA 1YC9A 5AZOA 3PIKA 4MT4A 4Y1KA
chains in the Genus database with same CATH superfamily
2VDDA 2WMZA 1EK9A 4MT0A 1TQQA 5AZPA 3D5KA 4K7RA 2XMNA 5BUNA 5AZSA 1WP1A 4K34A 2VDEA 4K7KA 5IUYA 1YC9A 5AZOA 3PIKA 4MT4A 4Y1KA
chains in the Genus database with same CATH topology
2VDDA 2WMZA 1EK9A 4MT0A 1TQQA 5AZPA 3D5KA 4K7RA 2XMNA 5BUNA 5AZSA 1WP1A 4K34A 2VDEA 4K7KA 5IUYA 1YC9A 5AZOA 3PIKA 4MT4A 4Y1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VDD A;  2WMZ A;  1EK9 A;  4MT0 A;  1TQQ A;  5AZP A;  3D5K A;  4K7R A;  2XMN A;  5BUN A;  5AZS A;  1WP1 A;  4K34 A;  2VDE A;  4K7K A;  5IUY A;  1YC9 A;  5AZO A;  3PIK A;  4MT4 A;  4Y1K A; 
#chains in the Genus database with same CATH topology
 2VDD A;  2WMZ A;  1EK9 A;  4MT0 A;  1TQQ A;  5AZP A;  3D5K A;  4K7R A;  2XMN A;  5BUN A;  5AZS A;  1WP1 A;  4K34 A;  2VDE A;  4K7K A;  5IUY A;  1YC9 A;  5AZO A;  3PIK A;  4MT4 A;  4Y1K A; 
#chains in the Genus database with same CATH homology
 2VDD A;  2WMZ A;  1EK9 A;  4MT0 A;  1TQQ A;  5AZP A;  3D5K A;  4K7R A;  2XMN A;  5BUN A;  5AZS A;  1WP1 A;  4K34 A;  2VDE A;  4K7K A;  5IUY A;  1YC9 A;  5AZO A;  3PIK A;  4MT4 A;  4Y1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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