5CQB | Genus

Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	78
sequence length	227
structure length	209
Chain Sequence	LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 209 atoms

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209 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Antagonism screen for inhibitors of bacterial cell wall biogenesis uncovers an inhibitor of undecaprenyl diphosphate synthase. pubmed doi rcsb
molecule keywords	Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-f
molecule tags	Transferase
source organism	Escherichia coli (strain k12)
total genus	78
structure length	209
sequence length	227
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2015-07-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	5cqbA00

4ONCA 5CQJA 1JP3A 4H2JA 3SGXA 3SH0A 5HXOA 5HXPA 2VG2A 3UGSA 2VG4A 3SGVA 1V7UA 3SGTA 1F75A 2E9CA 4CMVA 3WYJA 3WQLA 5CQBA 5KH4A 4H2MA 5KH5A 1X09A 4U82A 4CMWA 3TH8A 2VG3A 3WQNA 2VFWA 4H2OA 2DTNA 5HXNA 4KT8A 5HC6A 4Q9MA 5HXQA 5HC8A 3QASA 2E99A 4H3AA 1X08A 2VG1A 2E9DA 2E9AA 4H3CA 5HC7A 4CMXA 4H8EA 3WQMA 1X06A 5HXTA 2VG0A 3WQKA 4H38A 4Q9OA 5KH2A 2D2RA 1X07A 1UEHA 2E98A 3WYIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A; 
#chains in the Genus database with same CATH topology
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A; 
#chains in the Genus database with same CATH homology
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5CQBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations