5CY5B

Crystal structure of the t33-51h designed self-assembling protein tetrahedron
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
149
structure length
149
Chain Sequence
SPVVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTMDMIIYLIKRSVEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIKAASELTEINANVLLYANMLSNILFMHALISNKRLNIPEKIW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the T33-51H designed self-assembling protein tetrahedron
rcsb
molecule tags De novo protein
source organism Thermoplasma acidophilum
molecule keywords T33-51H-B
total genus 59
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2015-07-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1200.10 Mainly Alpha Up-down Bundle Hypothetical Protein Ta1238; Chain: A; Cobalamin adenosyltransferase-like 5cy5B00
3GAIA 5CY5B 2IDXA 3GAJA 3KE5A 1WY1A 4NWQA 1NOGA 4NWPA 1NIGA 3CI3A 2R6XA 2ZHZA 3GAHA 3CI4A 5CY5A 1RTYA 2G2DA 2NT8A 2R6TA 2AH6A 2ZHYA 3CI1A 1WOZA 3KE4A 1WVTA
chains in the Genus database with same CATH superfamily
3GAIA 5CY5B 2IDXA 3GAJA 3KE5A 1WY1A 4NWQA 1NOGA 4NWPA 1NIGA 3CI3A 2R6XA 2ZHZA 3GAHA 3CI4A 5CY5A 1RTYA 2G2DA 2NT8A 2R6TA 2AH6A 2ZHYA 3CI1A 1WOZA 3KE4A 1WVTA
chains in the Genus database with same CATH topology
3GAIA 5CY5B 2IDXA 3GAJA 3KE5A 1WY1A 4NWQA 1NOGA 4NWPA 1NIGA 3CI3A 2R6XA 2ZHZA 3GAHA 3CI4A 5CY5A 1RTYA 2G2DA 2NT8A 2R6TA 2AH6A 2ZHYA 3CI1A 1WOZA 3KE4A 1WVTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GAI A;  5CY5 B;  2IDX A;  3GAJ A;  3KE5 A;  1WY1 A;  4NWQ A;  1NOG A;  4NWP A;  1NIG A;  3CI3 A;  2R6X A;  2ZHZ A;  3GAH A;  3CI4 A;  5CY5 A;  1RTY A;  2G2D A;  2NT8 A;  2R6T A;  2AH6 A;  2ZHY A;  3CI1 A;  1WOZ A;  3KE4 A;  1WVT A; 
#chains in the Genus database with same CATH topology
 3GAI A;  5CY5 B;  2IDX A;  3GAJ A;  3KE5 A;  1WY1 A;  4NWQ A;  1NOG A;  4NWP A;  1NIG A;  3CI3 A;  2R6X A;  2ZHZ A;  3GAH A;  3CI4 A;  5CY5 A;  1RTY A;  2G2D A;  2NT8 A;  2R6T A;  2AH6 A;  2ZHY A;  3CI1 A;  1WOZ A;  3KE4 A;  1WVT A; 
#chains in the Genus database with same CATH homology
 3GAI A;  5CY5 B;  2IDX A;  3GAJ A;  3KE5 A;  1WY1 A;  4NWQ A;  1NOG A;  4NWP A;  1NIG A;  3CI3 A;  2R6X A;  2ZHZ A;  3GAH A;  3CI4 A;  5CY5 A;  1RTY A;  2G2D A;  2NT8 A;  2R6T A;  2AH6 A;  2ZHY A;  3CI1 A;  1WOZ A;  3KE4 A;  1WVT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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