5HC7 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	230
structure length	230
Chain Sequence	DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQTGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSDVKELVTSQQDIQFSAIGDKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEHGILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYRCR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/transferase inhibitor
source organism	Lavandula lanata
publication title	Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase pubmed doi rcsb
molecule keywords	prenyltransference for protein
total genus	91
structure length	230
sequence length	230
ec nomenclature
pdb deposition date	2016-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	5hc7A00

4Q9MA 2VG3A 5HXPA 3SGVA 2VG4A 5CQJA 3QASA 4CMVA 3WYIA 1X09A 5CQBA 5KH5A 4U82A 3WQMA 1X06A 3WQLA 5KH4A 2E9CA 1JP3A 4Q9OA 1V7UA 4H8EA 3WQNA 3WYJA 2VFWA 4H2MA 3TH8A 5HXTA 2E98A 4ONCA 5HC8A 5HXQA 5HXOA 1F75A 4H3AA 2E9AA 5HC7A 5HC6A 4CMWA 2VG0A 4CMXA 5HXNA 5KH2A 2VG1A 3SH0A 1X08A 4H3CA 3SGXA 2DTNA 1UEHA 2D2RA 4H2JA 1X07A 2E99A 3SGTA 3WQKA 4H2OA 4KT8A 2E9DA 2VG2A 4H38A 3UGSA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4Q9M A;  2VG3 A;  5HXP A;  3SGV A;  2VG4 A;  5CQJ A;  3QAS A;  4CMV A;  3WYI A;  1X09 A;  5CQB A;  5KH5 A;  4U82 A;  3WQM A;  1X06 A;  3WQL A;  5KH4 A;  2E9C A;  1JP3 A;  4Q9O A;  1V7U A;  4H8E A;  3WQN A;  3WYJ A;  2VFW A;  4H2M A;  3TH8 A;  5HXT A;  2E98 A;  4ONC A;  5HC8 A;  5HXQ A;  5HXO A;  1F75 A;  4H3A A;  2E9A A;  5HC7 A;  5HC6 A;  4CMW A;  2VG0 A;  4CMX A;  5HXN A;  5KH2 A;  2VG1 A;  3SH0 A;  1X08 A;  4H3C A;  3SGX A;  2DTN A;  1UEH A;  2D2R A;  4H2J A;  1X07 A;  2E99 A;  3SGT A;  3WQK A;  4H2O A;  4KT8 A;  2E9D A;  2VG2 A;  4H38 A;  3UGS A; 
#chains in the Genus database with same CATH topology
 4Q9M A;  2VG3 A;  5HXP A;  3SGV A;  2VG4 A;  5CQJ A;  3QAS A;  4CMV A;  3WYI A;  1X09 A;  5CQB A;  5KH5 A;  4U82 A;  3WQM A;  1X06 A;  3WQL A;  5KH4 A;  2E9C A;  1JP3 A;  4Q9O A;  1V7U A;  4H8E A;  3WQN A;  3WYJ A;  2VFW A;  4H2M A;  3TH8 A;  5HXT A;  2E98 A;  4ONC A;  5HC8 A;  5HXQ A;  5HXO A;  1F75 A;  4H3A A;  2E9A A;  5HC7 A;  5HC6 A;  4CMW A;  2VG0 A;  4CMX A;  5HXN A;  5KH2 A;  2VG1 A;  3SH0 A;  1X08 A;  4H3C A;  3SGX A;  2DTN A;  1UEH A;  2D2R A;  4H2J A;  1X07 A;  2E99 A;  3SGT A;  3WQK A;  4H2O A;  4KT8 A;  2E9D A;  2VG2 A;  4H38 A;  3UGS A; 
#chains in the Genus database with same CATH homology
 4Q9M A;  2VG3 A;  5HXP A;  3SGV A;  2VG4 A;  5CQJ A;  3QAS A;  4CMV A;  3WYI A;  1X09 A;  5CQB A;  5KH5 A;  4U82 A;  3WQM A;  1X06 A;  3WQL A;  5KH4 A;  2E9C A;  1JP3 A;  4Q9O A;  1V7U A;  4H8E A;  3WQN A;  3WYJ A;  2VFW A;  4H2M A;  3TH8 A;  5HXT A;  2E98 A;  4ONC A;  5HC8 A;  5HXQ A;  5HXO A;  1F75 A;  4H3A A;  2E9A A;  5HC7 A;  5HC6 A;  4CMW A;  2VG0 A;  4CMX A;  5HXN A;  5KH2 A;  2VG1 A;  3SH0 A;  1X08 A;  4H3C A;  3SGX A;  2DTN A;  1UEH A;  2D2R A;  4H2J A;  1X07 A;  2E99 A;  3SGT A;  3WQK A;  4H2O A;  4KT8 A;  2E9D A;  2VG2 A;  4H38 A;  3UGS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5HC7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations