5KH2A

Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps)
Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
229
structure length
224
Chain Sequence
QVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (167-170)S1 (22-27)AH1 (30-37)AH2 (41-62)AH3 (80-105)TIV1 (114-117)S2 (66-71)S3 (108-112)AH4 (120-133)AH5 (149-166)S4 (140-144)TI2 (133-136)TI5 (189-192)3H1 (171-173)TVIII3 (195-198)TI3 (183-186)TI4 (185-188)TI6 (190-193)TI'1 (207-210)TIV3 (209-212)TI7 (212-215)TI8 (213-216)S6 (219-222)TI1 (115-118)AH6 (176-182)TIV4 (211-214)TI9 (215-218)TVIII1 (20-23)TIV2 (144-147)S5 (197-200)Updating...
connected with : NaN
publication title Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
pubmed doi rcsb
molecule keywords Isoprenyl transferase
molecule tags Transferase
source organism Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
total genus 84
structure length 224
sequence length 229
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.-:
pdb deposition date 2016-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 5kh2A00
5HXOA 1UEHA 4U82A 3QASA 5KH2A 1X09A 1X07A 2VG4A 4H38A 3SGXA 2E9CA 3WQKA 2E9DA 5HXNA 3SGVA 2VFWA 3WYJA 2VG3A 3WYIA 5HXTA 2DTNA 4H3AA 4ONCA 5HC6A 1X06A 4H8EA 3SH0A 5HXQA 2D2RA 1X08A 5HXPA 4H2OA 4CMXA 5KH4A 5CQJA 3WQMA 4CMWA 1JP3A 2E98A 2VG1A 2VG2A 4Q9MA 4H3CA 3UGSA 3WQNA 2E99A 4H2MA 3WQLA 4CMVA 5KH5A 4KT8A 1F75A 4Q9OA 3SGTA 2E9AA 4H2JA 3TH8A 2VG0A 5HC8A 1V7UA 5HC7A 5CQBA
chains in the Genus database with same CATH superfamily
5HXOA 1UEHA 4U82A 3QASA 5KH2A 1X09A 1X07A 2VG4A 4H38A 3SGXA 2E9CA 3WQKA 2E9DA 5HXNA 3SGVA 2VFWA 3WYJA 2VG3A 3WYIA 5HXTA 2DTNA 4H3AA 4ONCA 5HC6A 1X06A 4H8EA 3SH0A 5HXQA 2D2RA 1X08A 5HXPA 4H2OA 4CMXA 5KH4A 5CQJA 3WQMA 4CMWA 1JP3A 2E98A 2VG1A 2VG2A 4Q9MA 4H3CA 3UGSA 3WQNA 2E99A 4H2MA 3WQLA 4CMVA 5KH5A 4KT8A 1F75A 4Q9OA 3SGTA 2E9AA 4H2JA 3TH8A 2VG0A 5HC8A 1V7UA 5HC7A 5CQBA
chains in the Genus database with same CATH topology
5HXOA 1UEHA 4U82A 3QASA 5KH2A 1X09A 1X07A 2VG4A 4H38A 3SGXA 2E9CA 3WQKA 2E9DA 5HXNA 3SGVA 2VFWA 3WYJA 2VG3A 3WYIA 5HXTA 2DTNA 4H3AA 4ONCA 5HC6A 1X06A 4H8EA 3SH0A 5HXQA 2D2RA 1X08A 5HXPA 4H2OA 4CMXA 5KH4A 5CQJA 3WQMA 4CMWA 1JP3A 2E98A 2VG1A 2VG2A 4Q9MA 4H3CA 3UGSA 3WQNA 2E99A 4H2MA 3WQLA 4CMVA 5KH5A 4KT8A 1F75A 4Q9OA 3SGTA 2E9AA 4H2JA 3TH8A 2VG0A 5HC8A 1V7UA 5HC7A 5CQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HXO A;  1UEH A;  4U82 A;  3QAS A;  5KH2 A;  1X09 A;  1X07 A;  2VG4 A;  4H38 A;  3SGX A;  2E9C A;  3WQK A;  2E9D A;  5HXN A;  3SGV A;  2VFW A;  3WYJ A;  2VG3 A;  3WYI A;  5HXT A;  2DTN A;  4H3A A;  4ONC A;  5HC6 A;  1X06 A;  4H8E A;  3SH0 A;  5HXQ A;  2D2R A;  1X08 A;  5HXP A;  4H2O A;  4CMX A;  5KH4 A;  5CQJ A;  3WQM A;  4CMW A;  1JP3 A;  2E98 A;  2VG1 A;  2VG2 A;  4Q9M A;  4H3C A;  3UGS A;  3WQN A;  2E99 A;  4H2M A;  3WQL A;  4CMV A;  5KH5 A;  4KT8 A;  1F75 A;  4Q9O A;  3SGT A;  2E9A A;  4H2J A;  3TH8 A;  2VG0 A;  5HC8 A;  1V7U A;  5HC7 A;  5CQB A; 
#chains in the Genus database with same CATH topology
 5HXO A;  1UEH A;  4U82 A;  3QAS A;  5KH2 A;  1X09 A;  1X07 A;  2VG4 A;  4H38 A;  3SGX A;  2E9C A;  3WQK A;  2E9D A;  5HXN A;  3SGV A;  2VFW A;  3WYJ A;  2VG3 A;  3WYI A;  5HXT A;  2DTN A;  4H3A A;  4ONC A;  5HC6 A;  1X06 A;  4H8E A;  3SH0 A;  5HXQ A;  2D2R A;  1X08 A;  5HXP A;  4H2O A;  4CMX A;  5KH4 A;  5CQJ A;  3WQM A;  4CMW A;  1JP3 A;  2E98 A;  2VG1 A;  2VG2 A;  4Q9M A;  4H3C A;  3UGS A;  3WQN A;  2E99 A;  4H2M A;  3WQL A;  4CMV A;  5KH5 A;  4KT8 A;  1F75 A;  4Q9O A;  3SGT A;  2E9A A;  4H2J A;  3TH8 A;  2VG0 A;  5HC8 A;  1V7U A;  5HC7 A;  5CQB A; 
#chains in the Genus database with same CATH homology
 5HXO A;  1UEH A;  4U82 A;  3QAS A;  5KH2 A;  1X09 A;  1X07 A;  2VG4 A;  4H38 A;  3SGX A;  2E9C A;  3WQK A;  2E9D A;  5HXN A;  3SGV A;  2VFW A;  3WYJ A;  2VG3 A;  3WYI A;  5HXT A;  2DTN A;  4H3A A;  4ONC A;  5HC6 A;  1X06 A;  4H8E A;  3SH0 A;  5HXQ A;  2D2R A;  1X08 A;  5HXP A;  4H2O A;  4CMX A;  5KH4 A;  5CQJ A;  3WQM A;  4CMW A;  1JP3 A;  2E98 A;  2VG1 A;  2VG2 A;  4Q9M A;  4H3C A;  3UGS A;  3WQN A;  2E99 A;  4H2M A;  3WQL A;  4CMV A;  5KH5 A;  4KT8 A;  1F75 A;  4Q9O A;  3SGT A;  2E9A A;  4H2J A;  3TH8 A;  2VG0 A;  5HC8 A;  1V7U A;  5HC7 A;  5CQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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