5KH4A

Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps) with farnesyl diphosphate
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
231
structure length
231
Chain Sequence
EVPTQVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (211-214)TI7 (213-216)TVIII1 (20-23)S1 (22-26)AH1 (30-37)AH2 (41-62)S2 (66-73)AH4 (120-133)3H1 (76-78)TI1 (73-76)S3 (108-112)TI2 (115-118)TIV1 (114-117)S4 (140-147)TI3 (133-136)TVIII3 (195-198)AH5 (149-166)3H2 (171-173)TVIII2 (167-170)TI'1 (201-204)AH6 (176-182)TI4 (183-186)TIV3 (207-210)TI5 (185-188)TIV4 (209-212)3H3 (190-192)TI8 (215-218)AH3 (81-105)S5 (197-200)S6 (219-222)3H4 (227-229)Updating...
connected with : NaN
publication title Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
pubmed doi rcsb
molecule keywords Isoprenyl transferase
molecule tags Transferase
source organism Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
total genus 82
structure length 231
sequence length 231
chains with identical sequence B
ec nomenclature ec 2.5.1.-:
pdb deposition date 2016-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 5kh4A00
3SGXA 2D2RA 2VG4A 4H38A 5HXNA 5HC8A 2E9CA 5HC7A 3UGSA 2E99A 5KH2A 4U82A 2VG2A 4CMXA 1X08A 4H2JA 5HXQA 4H2OA 5HXOA 2VFWA 5HC6A 1UEHA 4ONCA 1F75A 4Q9OA 2VG3A 5CQBA 3WQNA 4CMVA 3WYJA 3TH8A 5KH5A 3WQMA 4KT8A 4Q9MA 1JP3A 4H3CA 5KH4A 3QASA 1V7UA 1X06A 2DTNA 4H8EA 3WQKA 5HXPA 2VG1A 3WYIA 3SH0A 2VG0A 1X07A 1X09A 2E9AA 5CQJA 3SGTA 2E98A 3SGVA 3WQLA 4CMWA 2E9DA 4H3AA 4H2MA 5HXTA
chains in the Genus database with same CATH superfamily
3SGXA 2D2RA 2VG4A 4H38A 5HXNA 5HC8A 2E9CA 5HC7A 3UGSA 2E99A 5KH2A 4U82A 2VG2A 4CMXA 1X08A 4H2JA 5HXQA 4H2OA 5HXOA 2VFWA 5HC6A 1UEHA 4ONCA 1F75A 4Q9OA 2VG3A 5CQBA 3WQNA 4CMVA 3WYJA 3TH8A 5KH5A 3WQMA 4KT8A 4Q9MA 1JP3A 4H3CA 5KH4A 3QASA 1V7UA 1X06A 2DTNA 4H8EA 3WQKA 5HXPA 2VG1A 3WYIA 3SH0A 2VG0A 1X07A 1X09A 2E9AA 5CQJA 3SGTA 2E98A 3SGVA 3WQLA 4CMWA 2E9DA 4H3AA 4H2MA 5HXTA
chains in the Genus database with same CATH topology
3SGXA 2D2RA 2VG4A 4H38A 5HXNA 5HC8A 2E9CA 5HC7A 3UGSA 2E99A 5KH2A 4U82A 2VG2A 4CMXA 1X08A 4H2JA 5HXQA 4H2OA 5HXOA 2VFWA 5HC6A 1UEHA 4ONCA 1F75A 4Q9OA 2VG3A 5CQBA 3WQNA 4CMVA 3WYJA 3TH8A 5KH5A 3WQMA 4KT8A 4Q9MA 1JP3A 4H3CA 5KH4A 3QASA 1V7UA 1X06A 2DTNA 4H8EA 3WQKA 5HXPA 2VG1A 3WYIA 3SH0A 2VG0A 1X07A 1X09A 2E9AA 5CQJA 3SGTA 2E98A 3SGVA 3WQLA 4CMWA 2E9DA 4H3AA 4H2MA 5HXTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SGX A;  2D2R A;  2VG4 A;  4H38 A;  5HXN A;  5HC8 A;  2E9C A;  5HC7 A;  3UGS A;  2E99 A;  5KH2 A;  4U82 A;  2VG2 A;  4CMX A;  1X08 A;  4H2J A;  5HXQ A;  4H2O A;  5HXO A;  2VFW A;  5HC6 A;  1UEH A;  4ONC A;  1F75 A;  4Q9O A;  2VG3 A;  5CQB A;  3WQN A;  4CMV A;  3WYJ A;  3TH8 A;  5KH5 A;  3WQM A;  4KT8 A;  4Q9M A;  1JP3 A;  4H3C A;  5KH4 A;  3QAS A;  1V7U A;  1X06 A;  2DTN A;  4H8E A;  3WQK A;  5HXP A;  2VG1 A;  3WYI A;  3SH0 A;  2VG0 A;  1X07 A;  1X09 A;  2E9A A;  5CQJ A;  3SGT A;  2E98 A;  3SGV A;  3WQL A;  4CMW A;  2E9D A;  4H3A A;  4H2M A;  5HXT A; 
#chains in the Genus database with same CATH topology
 3SGX A;  2D2R A;  2VG4 A;  4H38 A;  5HXN A;  5HC8 A;  2E9C A;  5HC7 A;  3UGS A;  2E99 A;  5KH2 A;  4U82 A;  2VG2 A;  4CMX A;  1X08 A;  4H2J A;  5HXQ A;  4H2O A;  5HXO A;  2VFW A;  5HC6 A;  1UEH A;  4ONC A;  1F75 A;  4Q9O A;  2VG3 A;  5CQB A;  3WQN A;  4CMV A;  3WYJ A;  3TH8 A;  5KH5 A;  3WQM A;  4KT8 A;  4Q9M A;  1JP3 A;  4H3C A;  5KH4 A;  3QAS A;  1V7U A;  1X06 A;  2DTN A;  4H8E A;  3WQK A;  5HXP A;  2VG1 A;  3WYI A;  3SH0 A;  2VG0 A;  1X07 A;  1X09 A;  2E9A A;  5CQJ A;  3SGT A;  2E98 A;  3SGV A;  3WQL A;  4CMW A;  2E9D A;  4H3A A;  4H2M A;  5HXT A; 
#chains in the Genus database with same CATH homology
 3SGX A;  2D2R A;  2VG4 A;  4H38 A;  5HXN A;  5HC8 A;  2E9C A;  5HC7 A;  3UGS A;  2E99 A;  5KH2 A;  4U82 A;  2VG2 A;  4CMX A;  1X08 A;  4H2J A;  5HXQ A;  4H2O A;  5HXO A;  2VFW A;  5HC6 A;  1UEH A;  4ONC A;  1F75 A;  4Q9O A;  2VG3 A;  5CQB A;  3WQN A;  4CMV A;  3WYJ A;  3TH8 A;  5KH5 A;  3WQM A;  4KT8 A;  4Q9M A;  1JP3 A;  4H3C A;  5KH4 A;  3QAS A;  1V7U A;  1X06 A;  2DTN A;  4H8E A;  3WQK A;  5HXP A;  2VG1 A;  3WYI A;  3SH0 A;  2VG0 A;  1X07 A;  1X09 A;  2E9A A;  5CQJ A;  3SGT A;  2E98 A;  3SGV A;  3WQL A;  4CMW A;  2E9D A;  4H3A A;  4H2M A;  5HXT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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