5KH4A

Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps) with farnesyl diphosphate
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
231
structure length
231
Chain Sequence
EVPTQVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (211-214)TI7 (213-216)TVIII1 (20-23)S1 (22-26)AH1 (30-37)AH2 (41-62)S2 (66-73)AH4 (120-133)3H1 (76-78)TI1 (73-76)S3 (108-112)TI2 (115-118)TIV1 (114-117)S4 (140-147)TI3 (133-136)TVIII3 (195-198)AH5 (149-166)3H2 (171-173)TVIII2 (167-170)TI'1 (201-204)AH6 (176-182)TI4 (183-186)TIV3 (207-210)TI5 (185-188)TIV4 (209-212)3H3 (190-192)TI8 (215-218)AH3 (81-105)S5 (197-200)S6 (219-222)3H4 (227-229)Updating...
connected with : NaN
publication title Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
pubmed doi rcsb
molecule keywords Isoprenyl transferase
molecule tags Transferase
source organism Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
total genus 82
structure length 231
sequence length 231
chains with identical sequence B
ec nomenclature ec 2.5.1.-:
pdb deposition date 2016-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 5kh4A00
5CQJA 5KH4A 2E99A 3WQMA 4H2JA 2VG2A 3UGSA 5HC7A 2D2RA 3SGVA 3WQLA 4CMVA 1X09A 2E9CA 3QASA 5HXQA 2E9AA 5HC8A 2VG0A 4Q9MA 3WQKA 2DTNA 4KT8A 2E9DA 2VFWA 5HXTA 5KH2A 4H38A 5CQBA 1X06A 3TH8A 5HXNA 1X08A 4Q9OA 5HXPA 4H3CA 4CMWA 1JP3A 2VG1A 4H2OA 3SH0A 4U82A 3WYIA 3SGXA 1V7UA 3SGTA 5HXOA 1UEHA 4H2MA 4H8EA 1F75A 4ONCA 3WQNA 1X07A 4CMXA 2VG3A 5KH5A 2E98A 4H3AA 2VG4A 3WYJA 5HC6A
chains in the Genus database with same CATH superfamily
5CQJA 5KH4A 2E99A 3WQMA 4H2JA 2VG2A 3UGSA 5HC7A 2D2RA 3SGVA 3WQLA 4CMVA 1X09A 2E9CA 3QASA 5HXQA 2E9AA 5HC8A 2VG0A 4Q9MA 3WQKA 2DTNA 4KT8A 2E9DA 2VFWA 5HXTA 5KH2A 4H38A 5CQBA 1X06A 3TH8A 5HXNA 1X08A 4Q9OA 5HXPA 4H3CA 4CMWA 1JP3A 2VG1A 4H2OA 3SH0A 4U82A 3WYIA 3SGXA 1V7UA 3SGTA 5HXOA 1UEHA 4H2MA 4H8EA 1F75A 4ONCA 3WQNA 1X07A 4CMXA 2VG3A 5KH5A 2E98A 4H3AA 2VG4A 3WYJA 5HC6A
chains in the Genus database with same CATH topology
5CQJA 5KH4A 2E99A 3WQMA 4H2JA 2VG2A 3UGSA 5HC7A 2D2RA 3SGVA 3WQLA 4CMVA 1X09A 2E9CA 3QASA 5HXQA 2E9AA 5HC8A 2VG0A 4Q9MA 3WQKA 2DTNA 4KT8A 2E9DA 2VFWA 5HXTA 5KH2A 4H38A 5CQBA 1X06A 3TH8A 5HXNA 1X08A 4Q9OA 5HXPA 4H3CA 4CMWA 1JP3A 2VG1A 4H2OA 3SH0A 4U82A 3WYIA 3SGXA 1V7UA 3SGTA 5HXOA 1UEHA 4H2MA 4H8EA 1F75A 4ONCA 3WQNA 1X07A 4CMXA 2VG3A 5KH5A 2E98A 4H3AA 2VG4A 3WYJA 5HC6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CQJ A;  5KH4 A;  2E99 A;  3WQM A;  4H2J A;  2VG2 A;  3UGS A;  5HC7 A;  2D2R A;  3SGV A;  3WQL A;  4CMV A;  1X09 A;  2E9C A;  3QAS A;  5HXQ A;  2E9A A;  5HC8 A;  2VG0 A;  4Q9M A;  3WQK A;  2DTN A;  4KT8 A;  2E9D A;  2VFW A;  5HXT A;  5KH2 A;  4H38 A;  5CQB A;  1X06 A;  3TH8 A;  5HXN A;  1X08 A;  4Q9O A;  5HXP A;  4H3C A;  4CMW A;  1JP3 A;  2VG1 A;  4H2O A;  3SH0 A;  4U82 A;  3WYI A;  3SGX A;  1V7U A;  3SGT A;  5HXO A;  1UEH A;  4H2M A;  4H8E A;  1F75 A;  4ONC A;  3WQN A;  1X07 A;  4CMX A;  2VG3 A;  5KH5 A;  2E98 A;  4H3A A;  2VG4 A;  3WYJ A;  5HC6 A; 
#chains in the Genus database with same CATH topology
 5CQJ A;  5KH4 A;  2E99 A;  3WQM A;  4H2J A;  2VG2 A;  3UGS A;  5HC7 A;  2D2R A;  3SGV A;  3WQL A;  4CMV A;  1X09 A;  2E9C A;  3QAS A;  5HXQ A;  2E9A A;  5HC8 A;  2VG0 A;  4Q9M A;  3WQK A;  2DTN A;  4KT8 A;  2E9D A;  2VFW A;  5HXT A;  5KH2 A;  4H38 A;  5CQB A;  1X06 A;  3TH8 A;  5HXN A;  1X08 A;  4Q9O A;  5HXP A;  4H3C A;  4CMW A;  1JP3 A;  2VG1 A;  4H2O A;  3SH0 A;  4U82 A;  3WYI A;  3SGX A;  1V7U A;  3SGT A;  5HXO A;  1UEH A;  4H2M A;  4H8E A;  1F75 A;  4ONC A;  3WQN A;  1X07 A;  4CMX A;  2VG3 A;  5KH5 A;  2E98 A;  4H3A A;  2VG4 A;  3WYJ A;  5HC6 A; 
#chains in the Genus database with same CATH homology
 5CQJ A;  5KH4 A;  2E99 A;  3WQM A;  4H2J A;  2VG2 A;  3UGS A;  5HC7 A;  2D2R A;  3SGV A;  3WQL A;  4CMV A;  1X09 A;  2E9C A;  3QAS A;  5HXQ A;  2E9A A;  5HC8 A;  2VG0 A;  4Q9M A;  3WQK A;  2DTN A;  4KT8 A;  2E9D A;  2VFW A;  5HXT A;  5KH2 A;  4H38 A;  5CQB A;  1X06 A;  3TH8 A;  5HXN A;  1X08 A;  4Q9O A;  5HXP A;  4H3C A;  4CMW A;  1JP3 A;  2VG1 A;  4H2O A;  3SH0 A;  4U82 A;  3WYI A;  3SGX A;  1V7U A;  3SGT A;  5HXO A;  1UEH A;  4H2M A;  4H8E A;  1F75 A;  4ONC A;  3WQN A;  1X07 A;  4CMX A;  2VG3 A;  5KH5 A;  2E98 A;  4H3A A;  2VG4 A;  3WYJ A;  5HC6 A; 
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