5KH5A

Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps) in complex with ~{n}-(3-azanyl-3-oxidanylidene-propyl)-5-(1-benzothiophen-5-yl)-1-(phenylmethyl)-~{n}-[(4-propan-2-yloxyphenyl)methyl]pyrazole-4-carboxamide
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
232
structure length
230
Chain Sequence
TQVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRHRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (171-174)TIV4 (209-212)S1 (22-27)AH1 (30-37)TI'2 (207-210)AH2 (41-62)S2 (66-71)AH3 (80-87)AH4 (89-105)TIV1 (115-118)S3 (108-112)AH5 (120-133)TIV3 (190-193)AH6 (149-166)TI1 (133-136)TVIII3 (195-198)S4 (140-144)TI2 (170-173)TVIII2 (167-170)AH7 (176-182)S5 (197-200)TI5 (185-188)TI6 (189-192)TI4 (183-186)TI8 (213-216)TIV5 (211-214)S6 (219-222)TI7 (212-215)TVIII1 (20-23)3H1 (227-229)TI'1 (201-204)TI9 (215-218)TIV2 (144-147)Updating...
connected with : NaN
molecule tags Transferase/transferase inhibitor
source organism Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
publication title Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
pubmed doi rcsb
molecule keywords Isoprenyl transferase
total genus 82
structure length 230
sequence length 232
chains with identical sequence B
ec nomenclature ec 2.5.1.-:
pdb deposition date 2016-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 5kh5A00
5KH4A 1UEHA 2VG3A 4KT8A 4U82A 3WQMA 3UGSA 2E98A 1X07A 3SGTA 2E99A 2VG0A 2E9AA 5HC6A 3SGVA 1F75A 5HXNA 3WQKA 3WQLA 5CQBA 1X08A 2DTNA 4Q9MA 2E9CA 2VG2A 5HC8A 4H8EA 3SH0A 5KH2A 2VG4A 2D2RA 4Q9OA 1JP3A 4CMVA 3WQNA 5HXOA 5HXQA 1X06A 3TH8A 1X09A 3SGXA 4ONCA 2VG1A 4H2JA 3WYIA 3WYJA 2VFWA 4H2MA 4CMXA 2E9DA 4H3AA 1V7UA 4H38A 4H2OA 5HXTA 3QASA 4H3CA 5CQJA 5HXPA 4CMWA 5HC7A 5KH5A
chains in the Genus database with same CATH superfamily
5KH4A 1UEHA 2VG3A 4KT8A 4U82A 3WQMA 3UGSA 2E98A 1X07A 3SGTA 2E99A 2VG0A 2E9AA 5HC6A 3SGVA 1F75A 5HXNA 3WQKA 3WQLA 5CQBA 1X08A 2DTNA 4Q9MA 2E9CA 2VG2A 5HC8A 4H8EA 3SH0A 5KH2A 2VG4A 2D2RA 4Q9OA 1JP3A 4CMVA 3WQNA 5HXOA 5HXQA 1X06A 3TH8A 1X09A 3SGXA 4ONCA 2VG1A 4H2JA 3WYIA 3WYJA 2VFWA 4H2MA 4CMXA 2E9DA 4H3AA 1V7UA 4H38A 4H2OA 5HXTA 3QASA 4H3CA 5CQJA 5HXPA 4CMWA 5HC7A 5KH5A
chains in the Genus database with same CATH topology
5KH4A 1UEHA 2VG3A 4KT8A 4U82A 3WQMA 3UGSA 2E98A 1X07A 3SGTA 2E99A 2VG0A 2E9AA 5HC6A 3SGVA 1F75A 5HXNA 3WQKA 3WQLA 5CQBA 1X08A 2DTNA 4Q9MA 2E9CA 2VG2A 5HC8A 4H8EA 3SH0A 5KH2A 2VG4A 2D2RA 4Q9OA 1JP3A 4CMVA 3WQNA 5HXOA 5HXQA 1X06A 3TH8A 1X09A 3SGXA 4ONCA 2VG1A 4H2JA 3WYIA 3WYJA 2VFWA 4H2MA 4CMXA 2E9DA 4H3AA 1V7UA 4H38A 4H2OA 5HXTA 3QASA 4H3CA 5CQJA 5HXPA 4CMWA 5HC7A 5KH5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KH4 A;  1UEH A;  2VG3 A;  4KT8 A;  4U82 A;  3WQM A;  3UGS A;  2E98 A;  1X07 A;  3SGT A;  2E99 A;  2VG0 A;  2E9A A;  5HC6 A;  3SGV A;  1F75 A;  5HXN A;  3WQK A;  3WQL A;  5CQB A;  1X08 A;  2DTN A;  4Q9M A;  2E9C A;  2VG2 A;  5HC8 A;  4H8E A;  3SH0 A;  5KH2 A;  2VG4 A;  2D2R A;  4Q9O A;  1JP3 A;  4CMV A;  3WQN A;  5HXO A;  5HXQ A;  1X06 A;  3TH8 A;  1X09 A;  3SGX A;  4ONC A;  2VG1 A;  4H2J A;  3WYI A;  3WYJ A;  2VFW A;  4H2M A;  4CMX A;  2E9D A;  4H3A A;  1V7U A;  4H38 A;  4H2O A;  5HXT A;  3QAS A;  4H3C A;  5CQJ A;  5HXP A;  4CMW A;  5HC7 A;  5KH5 A; 
#chains in the Genus database with same CATH topology
 5KH4 A;  1UEH A;  2VG3 A;  4KT8 A;  4U82 A;  3WQM A;  3UGS A;  2E98 A;  1X07 A;  3SGT A;  2E99 A;  2VG0 A;  2E9A A;  5HC6 A;  3SGV A;  1F75 A;  5HXN A;  3WQK A;  3WQL A;  5CQB A;  1X08 A;  2DTN A;  4Q9M A;  2E9C A;  2VG2 A;  5HC8 A;  4H8E A;  3SH0 A;  5KH2 A;  2VG4 A;  2D2R A;  4Q9O A;  1JP3 A;  4CMV A;  3WQN A;  5HXO A;  5HXQ A;  1X06 A;  3TH8 A;  1X09 A;  3SGX A;  4ONC A;  2VG1 A;  4H2J A;  3WYI A;  3WYJ A;  2VFW A;  4H2M A;  4CMX A;  2E9D A;  4H3A A;  1V7U A;  4H38 A;  4H2O A;  5HXT A;  3QAS A;  4H3C A;  5CQJ A;  5HXP A;  4CMW A;  5HC7 A;  5KH5 A; 
#chains in the Genus database with same CATH homology
 5KH4 A;  1UEH A;  2VG3 A;  4KT8 A;  4U82 A;  3WQM A;  3UGS A;  2E98 A;  1X07 A;  3SGT A;  2E99 A;  2VG0 A;  2E9A A;  5HC6 A;  3SGV A;  1F75 A;  5HXN A;  3WQK A;  3WQL A;  5CQB A;  1X08 A;  2DTN A;  4Q9M A;  2E9C A;  2VG2 A;  5HC8 A;  4H8E A;  3SH0 A;  5KH2 A;  2VG4 A;  2D2R A;  4Q9O A;  1JP3 A;  4CMV A;  3WQN A;  5HXO A;  5HXQ A;  1X06 A;  3TH8 A;  1X09 A;  3SGX A;  4ONC A;  2VG1 A;  4H2J A;  3WYI A;  3WYJ A;  2VFW A;  4H2M A;  4CMX A;  2E9D A;  4H3A A;  1V7U A;  4H38 A;  4H2O A;  5HXT A;  3QAS A;  4H3C A;  5CQJ A;  5HXP A;  4CMW A;  5HC7 A;  5KH5 A; 
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