5KH5 | Genus

Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	232
structure length	230
Chain Sequence	TQVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRHRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 230 atoms

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230 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/transferase inhibitor
source organism	Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
publication title	Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase. pubmed doi rcsb
molecule keywords	Isoprenyl transferase
total genus	82
structure length	230
sequence length	232
chains with identical sequence	B
ec nomenclature	ec 2.5.1.-:
pdb deposition date	2016-06-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	5kh5A00

5HC6A 5HXOA 3WQKA 3UGSA 2VG4A 4CMXA 4Q9MA 2DTNA 4H2JA 5HC8A 3SH0A 2VFWA 1X08A 4H3CA 1X09A 4H3AA 2E9CA 1V7UA 5CQJA 3TH8A 4H8EA 4U82A 3WQLA 5KH5A 3SGXA 1X07A 5CQBA 1F75A 1X06A 4Q9OA 3SGVA 4KT8A 5KH2A 2VG2A 5HC7A 2VG1A 5HXQA 5KH4A 4H2OA 2VG3A 3QASA 2E9AA 2E9DA 3WQNA 4CMWA 4CMVA 4H2MA 1JP3A 2VG0A 3SGTA 3WYJA 2E99A 4ONCA 5HXPA 2D2RA 3WYIA 3WQMA 5HXNA 4H38A 5HXTA 1UEHA 2E98A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5HC6 A;  5HXO A;  3WQK A;  3UGS A;  2VG4 A;  4CMX A;  4Q9M A;  2DTN A;  4H2J A;  5HC8 A;  3SH0 A;  2VFW A;  1X08 A;  4H3C A;  1X09 A;  4H3A A;  2E9C A;  1V7U A;  5CQJ A;  3TH8 A;  4H8E A;  4U82 A;  3WQL A;  5KH5 A;  3SGX A;  1X07 A;  5CQB A;  1F75 A;  1X06 A;  4Q9O A;  3SGV A;  4KT8 A;  5KH2 A;  2VG2 A;  5HC7 A;  2VG1 A;  5HXQ A;  5KH4 A;  4H2O A;  2VG3 A;  3QAS A;  2E9A A;  2E9D A;  3WQN A;  4CMW A;  4CMV A;  4H2M A;  1JP3 A;  2VG0 A;  3SGT A;  3WYJ A;  2E99 A;  4ONC A;  5HXP A;  2D2R A;  3WYI A;  3WQM A;  5HXN A;  4H38 A;  5HXT A;  1UEH A;  2E98 A; 
#chains in the Genus database with same CATH topology
 5HC6 A;  5HXO A;  3WQK A;  3UGS A;  2VG4 A;  4CMX A;  4Q9M A;  2DTN A;  4H2J A;  5HC8 A;  3SH0 A;  2VFW A;  1X08 A;  4H3C A;  1X09 A;  4H3A A;  2E9C A;  1V7U A;  5CQJ A;  3TH8 A;  4H8E A;  4U82 A;  3WQL A;  5KH5 A;  3SGX A;  1X07 A;  5CQB A;  1F75 A;  1X06 A;  4Q9O A;  3SGV A;  4KT8 A;  5KH2 A;  2VG2 A;  5HC7 A;  2VG1 A;  5HXQ A;  5KH4 A;  4H2O A;  2VG3 A;  3QAS A;  2E9A A;  2E9D A;  3WQN A;  4CMW A;  4CMV A;  4H2M A;  1JP3 A;  2VG0 A;  3SGT A;  3WYJ A;  2E99 A;  4ONC A;  5HXP A;  2D2R A;  3WYI A;  3WQM A;  5HXN A;  4H38 A;  5HXT A;  1UEH A;  2E98 A; 
#chains in the Genus database with same CATH homology
 5HC6 A;  5HXO A;  3WQK A;  3UGS A;  2VG4 A;  4CMX A;  4Q9M A;  2DTN A;  4H2J A;  5HC8 A;  3SH0 A;  2VFW A;  1X08 A;  4H3C A;  1X09 A;  4H3A A;  2E9C A;  1V7U A;  5CQJ A;  3TH8 A;  4H8E A;  4U82 A;  3WQL A;  5KH5 A;  3SGX A;  1X07 A;  5CQB A;  1F75 A;  1X06 A;  4Q9O A;  3SGV A;  4KT8 A;  5KH2 A;  2VG2 A;  5HC7 A;  2VG1 A;  5HXQ A;  5KH4 A;  4H2O A;  2VG3 A;  3QAS A;  2E9A A;  2E9D A;  3WQN A;  4CMW A;  4CMV A;  4H2M A;  1JP3 A;  2VG0 A;  3SGT A;  3WYJ A;  2E99 A;  4ONC A;  5HXP A;  2D2R A;  3WYI A;  3WQM A;  5HXN A;  4H38 A;  5HXT A;  1UEH A;  2E98 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5KH5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations