5KH5A

Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps) in complex with ~{n}-(3-azanyl-3-oxidanylidene-propyl)-5-(1-benzothiophen-5-yl)-1-(phenylmethyl)-~{n}-[(4-propan-2-yloxyphenyl)methyl]pyrazole-4-carboxamide
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
232
structure length
230
Chain Sequence
TQVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRRHRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (171-174)TIV4 (209-212)S1 (22-27)AH1 (30-37)TI'2 (207-210)AH2 (41-62)S2 (66-71)AH3 (80-87)AH4 (89-105)TIV1 (115-118)S3 (108-112)AH5 (120-133)TIV3 (190-193)AH6 (149-166)TI1 (133-136)TVIII3 (195-198)S4 (140-144)TI2 (170-173)TVIII2 (167-170)AH7 (176-182)S5 (197-200)TI5 (185-188)TI6 (189-192)TI4 (183-186)TI8 (213-216)TIV5 (211-214)S6 (219-222)TI7 (212-215)TVIII1 (20-23)3H1 (227-229)TI'1 (201-204)TI9 (215-218)TIV2 (144-147)Updating...
connected with : NaN
publication title Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
pubmed doi rcsb
molecule keywords Isoprenyl transferase
molecule tags Transferase/transferase inhibitor
source organism Streptococcus pneumoniae serotype 4 (strain atcc baa-334 / tigr4)
total genus 82
structure length 230
sequence length 232
chains with identical sequence B
ec nomenclature ec 2.5.1.-:
pdb deposition date 2016-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 5kh5A00
4Q9OA 1UEHA 3QASA 4KT8A 5CQBA 2E9AA 4H3CA 5HXQA 1JP3A 1F75A 2VG4A 2VG0A 1V7UA 4Q9MA 3WQKA 4CMVA 3TH8A 5KH4A 2VG2A 3SGVA 5HC7A 5HC6A 4H8EA 4H2JA 4ONCA 3WQNA 2E9DA 2DTNA 4H3AA 5KH2A 3UGSA 5HXPA 3SGTA 5HXOA 5HXNA 2D2RA 1X09A 2VFWA 5KH5A 2E99A 2E9CA 4H2MA 5CQJA 2E98A 4CMXA 5HC8A 4CMWA 3WYIA 3WYJA 3WQMA 4U82A 5HXTA 1X08A 3SGXA 4H38A 3SH0A 1X07A 2VG1A 1X06A 3WQLA 4H2OA 2VG3A
chains in the Genus database with same CATH superfamily
4Q9OA 1UEHA 3QASA 4KT8A 5CQBA 2E9AA 4H3CA 5HXQA 1JP3A 1F75A 2VG4A 2VG0A 1V7UA 4Q9MA 3WQKA 4CMVA 3TH8A 5KH4A 2VG2A 3SGVA 5HC7A 5HC6A 4H8EA 4H2JA 4ONCA 3WQNA 2E9DA 2DTNA 4H3AA 5KH2A 3UGSA 5HXPA 3SGTA 5HXOA 5HXNA 2D2RA 1X09A 2VFWA 5KH5A 2E99A 2E9CA 4H2MA 5CQJA 2E98A 4CMXA 5HC8A 4CMWA 3WYIA 3WYJA 3WQMA 4U82A 5HXTA 1X08A 3SGXA 4H38A 3SH0A 1X07A 2VG1A 1X06A 3WQLA 4H2OA 2VG3A
chains in the Genus database with same CATH topology
4Q9OA 1UEHA 3QASA 4KT8A 5CQBA 2E9AA 4H3CA 5HXQA 1JP3A 1F75A 2VG4A 2VG0A 1V7UA 4Q9MA 3WQKA 4CMVA 3TH8A 5KH4A 2VG2A 3SGVA 5HC7A 5HC6A 4H8EA 4H2JA 4ONCA 3WQNA 2E9DA 2DTNA 4H3AA 5KH2A 3UGSA 5HXPA 3SGTA 5HXOA 5HXNA 2D2RA 1X09A 2VFWA 5KH5A 2E99A 2E9CA 4H2MA 5CQJA 2E98A 4CMXA 5HC8A 4CMWA 3WYIA 3WYJA 3WQMA 4U82A 5HXTA 1X08A 3SGXA 4H38A 3SH0A 1X07A 2VG1A 1X06A 3WQLA 4H2OA 2VG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q9O A;  1UEH A;  3QAS A;  4KT8 A;  5CQB A;  2E9A A;  4H3C A;  5HXQ A;  1JP3 A;  1F75 A;  2VG4 A;  2VG0 A;  1V7U A;  4Q9M A;  3WQK A;  4CMV A;  3TH8 A;  5KH4 A;  2VG2 A;  3SGV A;  5HC7 A;  5HC6 A;  4H8E A;  4H2J A;  4ONC A;  3WQN A;  2E9D A;  2DTN A;  4H3A A;  5KH2 A;  3UGS A;  5HXP A;  3SGT A;  5HXO A;  5HXN A;  2D2R A;  1X09 A;  2VFW A;  5KH5 A;  2E99 A;  2E9C A;  4H2M A;  5CQJ A;  2E98 A;  4CMX A;  5HC8 A;  4CMW A;  3WYI A;  3WYJ A;  3WQM A;  4U82 A;  5HXT A;  1X08 A;  3SGX A;  4H38 A;  3SH0 A;  1X07 A;  2VG1 A;  1X06 A;  3WQL A;  4H2O A;  2VG3 A; 
#chains in the Genus database with same CATH topology
 4Q9O A;  1UEH A;  3QAS A;  4KT8 A;  5CQB A;  2E9A A;  4H3C A;  5HXQ A;  1JP3 A;  1F75 A;  2VG4 A;  2VG0 A;  1V7U A;  4Q9M A;  3WQK A;  4CMV A;  3TH8 A;  5KH4 A;  2VG2 A;  3SGV A;  5HC7 A;  5HC6 A;  4H8E A;  4H2J A;  4ONC A;  3WQN A;  2E9D A;  2DTN A;  4H3A A;  5KH2 A;  3UGS A;  5HXP A;  3SGT A;  5HXO A;  5HXN A;  2D2R A;  1X09 A;  2VFW A;  5KH5 A;  2E99 A;  2E9C A;  4H2M A;  5CQJ A;  2E98 A;  4CMX A;  5HC8 A;  4CMW A;  3WYI A;  3WYJ A;  3WQM A;  4U82 A;  5HXT A;  1X08 A;  3SGX A;  4H38 A;  3SH0 A;  1X07 A;  2VG1 A;  1X06 A;  3WQL A;  4H2O A;  2VG3 A; 
#chains in the Genus database with same CATH homology
 4Q9O A;  1UEH A;  3QAS A;  4KT8 A;  5CQB A;  2E9A A;  4H3C A;  5HXQ A;  1JP3 A;  1F75 A;  2VG4 A;  2VG0 A;  1V7U A;  4Q9M A;  3WQK A;  4CMV A;  3TH8 A;  5KH4 A;  2VG2 A;  3SGV A;  5HC7 A;  5HC6 A;  4H8E A;  4H2J A;  4ONC A;  3WQN A;  2E9D A;  2DTN A;  4H3A A;  5KH2 A;  3UGS A;  5HXP A;  3SGT A;  5HXO A;  5HXN A;  2D2R A;  1X09 A;  2VFW A;  5KH5 A;  2E99 A;  2E9C A;  4H2M A;  5CQJ A;  2E98 A;  4CMX A;  5HC8 A;  4CMW A;  3WYI A;  3WYJ A;  3WQM A;  4U82 A;  5HXT A;  1X08 A;  3SGX A;  4H38 A;  3SH0 A;  1X07 A;  2VG1 A;  1X06 A;  3WQL A;  4H2O A;  2VG3 A; 
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