5ZC2A

Acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah), reductase component (c1)
Total Genus 87

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
302
structure length
295
Chain Sequence
IDPMAFRRALGNFATGVTIMTAQTSGERVGVTANSFNSVSLDPALVLWSIDKKSSSYRIFEEATHFGVNILSAAQIELSNRFARRSDKFANIEFDLGVGNIPLFKNCSAAFECERYNIVEGGDHWIIIGRVVKFHDHGRSPLLYHQGAYSAVLPHPSLNMSETAEGVFPGRLYDNMYYLLTQAVRAYQNDYQPKQLASGFRTSEARLLLVLESKKCDLQREVAMPIREIEEATKILSEKGLLIDNGQHYELTEQGNACAHMLYKIAESHQEEVFAKYTVDERKLFKNMLKDLIGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (31-36)AH1 (16-24)AH2 (70-76)TI1 (65-68)TI3 (102-105)S1 (28-29)TVIII1 (24-27)TIV4 (55-58)TI2 (86-89)TIV3 (47-50)TIV1 (36-40)S4 (51-54)S5 (59-65)3H1 (113-115)S7 (109-111)S6 (79-84)AH3 (90-96)TII1 (104-107)TII'1 (136-139)S10 (139-151)S9 (124-136)TIV6 (119-122)AH5 (218-228)S11 (158-160)TIV7 (159-162)S12 (163-165)TI4 (179-182)TI5 (180-183)TIV8 (181-184)TIV9 (184-187)TI6 (186-189)TI7 (187-190)TIV10 (188-191)TIV11 (265-268)S14 (269-271)AH4 (192-214)AH6 (235-242)S13 (262-264)AH8 (273-294)TI8 (294-297)S3 (42-47)TVIII2 (54-57)S8 (117-119)AH7 (246-259)Updating...
connected with : NaN
molecule tags Flavoprotein
source organism Acinetobacter baumannii
publication title Crystal structure of the flavin reductase of Acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (HPAH) and identification of amino acid residues underlying its regulation by aromatic ligands
pubmed doi rcsb
molecule keywords p-hydroxyphenylacetate 3-hydroxylase, reductase component
total genus 87
structure length 295
sequence length 302
chains with identical sequence B
ec nomenclature ec 1.5.1.36: Flavin reductase (NADH).
pdb deposition date 2018-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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