5ZYRA

Crystal structure of the reductase (c1) component of p-hydroxyphenylacetate 3-hydroxylase (hpah) from acinetobacter baumannii
Total Genus 100

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
306
structure length
306
Chain Sequence
EKEVIDPMAFRRALGNFATGVTIMTAQTSSGERVGVTANSFNSVSLDPALVLWSIDKKSSSYRIFEEATHFGVNILSAAQIELSNRFARRSEDKFANIEFDLGVGNIPLFKNCSAAFECERYNIVEGGDHWIIIGRVVKFHDHGRSPLLYHQGAYSAVLPHPSLNMKSETAEGVFPGRLYDNMYYLLTQAVRAYQNDYQPKQLASGFRTSEARLLLVLESKTASSKCDLQREVAMPIREIEEATKILSEKGLLIDNGQHYELTEQGNACAHMLYKIAESHQEEVFAKYTVDERKLFKNMLKDLIGI
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (16-24)S9 (139-151)S1 (31-36)AH2 (70-76)TVIII1 (24-27)EMPTYS4 (59-65)AH3 (89-96)S5 (79-84)TI1 (37-40)TI3 (86-89)S3 (51-54)S2 (42-47)TII'1 (136-139)TIV1 (47-50)TIV2 (54-57)TIV3 (55-58)TII2 (119-122)S6 (109-112)3H1 (113-115)TIV6 (228-231)TII1 (104-107)TVIII2 (100-103)TI4 (102-105)S7 (116-119)S8 (124-136)3H3 (187-189)TIV4 (159-162)TIV5 (184-187)S11 (163-165)TI5 (174-177)3H2 (180-183)O1 (189-191)AH4 (192-214)AH7 (246-259)TIV7 (230-233)AH5 (218-228)AH6 (235-242)TIV8 (265-268)AH9 (299-313)TI2 (65-68)AH8 (273-294)S12 (262-264)S13 (269-271)TI6 (294-297)Updating...
connected with : NaN
molecule tags Flavoprotein
source organism Acinetobacter baumannii
publication title Crystal structure of the reductase (C1) component of p-hydroxyphenylacetate 3-hydroxylase (HPAH) from Acinetobacter baumannii
rcsb
molecule keywords p-hydroxyphenylacetate 3-hydroxylase, reductase component
total genus 100
structure length 306
sequence length 306
chains with identical sequence B
ec nomenclature
pdb deposition date 2018-05-28
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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