The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.
Total Genus |
5
|
sequence length |
72
|
structure length |
72
|
Chain Sequence |
GGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUCCCCAC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule tags |
Transferase/rna
|
molecule keywords |
tRNA(His)-5'-guanylyltransferase (Thg1) like protein
|
publication title |
Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
pubmed doi rcsb |
source organism |
Methanosarcina acetivorans
|
total genus |
5
|
structure length |
72
|
sequence length |
72
|
RNA BGSU Site |
RNA BGSU Site Entry
|
equivalent chains according to BGSU RNA Site |
5axn P
1ob2 B
4tna A
1ehz A
1i9v A
6gz5 Bw
6gz3 Bw
1tn1 A
1tn2 A
5m1j A3
6gqv AY
4tra A
6tna A
6gqb AX
1tra A
|
ec nomenclature | |
pdb deposition date | 2015-07-31 |
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...