5D5G | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	110
structure length	110
Chain Sequence	NIPFTNNLLFSGQVLYGDGRLTAKSHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSSSSSKHGDYVLILRDDGFAVIYGPAIWETSP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 110 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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110 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Crystal structure Colocasia esculenta tuber agglutinin at 1.74A resolution and its quaternary interactions doi rcsb
molecule keywords	Tuber agglutinin
total genus	21
structure length	110
sequence length	110
chains with identical sequence	D
ec nomenclature
pdb deposition date	2015-08-10

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	5d5gB00

4TKCA 5T1XB 1MSAA 5D9ZB 1KJ1D 5T20A 3A0EA 5J76B 3R0EA 3M7JA 1B2PA 1KJ1A 1NIVA 3DZWA 5D5GA 5T20B 1BWUD 3M7HA 1XD6A 3R0EB 4PDTA 1BWUP 3MEZA 3A0CA 2D04A 1BWUQ 3A0DA 5D5GB 1DLPA 1BWUA 3MEZB 4GC2A 4GC1A 5T1XA 2D04B 2DPFA 4H3OA 1NPLA 1JPCA 5D9ZA 5J76A 1XD5A
chains in the Genus database with same CATH superfamily

4TKCA 5T1XB 1MSAA 4OKCA 5D9ZB 1KJ1D 5T20A 3A0EA 5J76B 4LEAA 3R0EA 3M7JA 1B2PA 1KJ1A 1NIVA 3DZWA 5D5GA 5T20B 1BWUD 4OITA 3M7HA 1XD6A 3R0EB 4PDTA 4LEDA 1BWUP 3MEZA 3A0CA 2D04A 1BWUQ 3A0DA 5D5GB 1DLPA 4OIZA 1BWUA 3MEZB 4GC2A 4GC1A 5T1XA 2D04B 2DPFA 4H3OA 1NPLA 1JPCA 5D9ZA 4LE7A 5J76A 1XD5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4TKC A;  5T1X B;  1MSA A;  5D9Z B;  1KJ1 D;  5T20 A;  3A0E A;  5J76 B;  3R0E A;  3M7J A;  1B2P A;  1KJ1 A;  1NIV A;  3DZW A;  5D5G A;  5T20 B;  1BWU D;  3M7H A;  1XD6 A;  3R0E B;  4PDT A;  1BWU P;  3MEZ A;  3A0C A;  2D04 A;  1BWU Q;  3A0D A;  5D5G B;  1DLP A;  1BWU A;  3MEZ B;  4GC2 A;  4GC1 A;  5T1X A;  2D04 B;  2DPF A;  4H3O A;  1NPL A;  1JPC A;  5D9Z A;  5J76 A;  1XD5 A; 
#chains in the Genus database with same CATH topology
 4TKC A;  5T1X B;  1MSA A;  4OKC A;  5D9Z B;  1KJ1 D;  5T20 A;  3A0E A;  5J76 B;  4LEA A;  3R0E A;  3M7J A;  1B2P A;  1KJ1 A;  1NIV A;  3DZW A;  5D5G A;  5T20 B;  1BWU D;  4OIT A;  3M7H A;  1XD6 A;  3R0E B;  4PDT A;  4LED A;  1BWU P;  3MEZ A;  3A0C A;  2D04 A;  1BWU Q;  3A0D A;  5D5G B;  1DLP A;  4OIZ A;  1BWU A;  3MEZ B;  4GC2 A;  4GC1 A;  5T1X A;  2D04 B;  2DPF A;  4H3O A;  1NPL A;  1JPC A;  5D9Z A;  4LE7 A;  5J76 A;  1XD5 A; 
#chains in the Genus database with same CATH homology
 4TKC A;  5T1X B;  1MSA A;  5D9Z B;  1KJ1 D;  5T20 A;  3A0E A;  5J76 B;  3R0E A;  3M7J A;  1B2P A;  1KJ1 A;  1NIV A;  3DZW A;  5D5G A;  5T20 B;  1BWU D;  3M7H A;  1XD6 A;  3R0E B;  4PDT A;  1BWU P;  3MEZ A;  3A0C A;  2D04 A;  1BWU Q;  3A0D A;  5D5G B;  1DLP A;  1BWU A;  3MEZ B;  4GC2 A;  4GC1 A;  5T1X A;  2D04 B;  2DPF A;  4H3O A;  1NPL A;  1JPC A;  5D9Z A;  5J76 A;  1XD5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5D5GB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN