The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
334
|
structure length |
334
|
Chain Sequence |
MNDSSVIYRAIVTSKFRTEKMLNFYNSIGSGPDKNTIFITFGRSEPWSSNENEVGFAPPYPTDSVLGVTDMWTHMMGTVKVLPSMLDAVIPRRDWGDTRYPDPYTFRINDIVVCNSAPYNATESGAGWLVYRCLDVPDTGMCSIASLTDKDECLKLGGKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPEDLMRHSGEMIYMENRPPIIMAMDQTEEINILFTF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Role of bacteriophage T4 baseplate in regulating assembly and infection.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Enterobacteria phage t4
|
| molecule keywords |
Baseplate wedge protein gp7
|
| total genus |
22
|
| structure length |
334
|
| sequence length |
334
|
| chains with identical sequence |
C
|
| ec nomenclature | |
| pdb deposition date | 2016-01-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF09215 | Phage-Gp8 | Bacteriophage T4, Gp8 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | baseplate structural protein gp8, domain 1 | baseplate structural protein gp8, domain 1 | ||
| Mainly Beta | Beta Complex | baseplate structural protein gp8, domain 2 | baseplate structural protein gp8, domain 2 |
#chains in the Genus database with same CATH superfamily 1N8B A; 1N80 A; 1N7Z A; 5HX2 B; #chains in the Genus database with same CATH topology 1N8B A; 1N80 A; 1N7Z A; 5HX2 B; #chains in the Genus database with same CATH homology 1N8B A; 1N80 A; 1N7Z A; 5HX2 B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
