The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
281
|
sequence length |
757
|
structure length |
745
|
Chain Sequence |
SPVIPTDPAIETHIREWLQKMTLEQKIGQMCEITIDVVSDLETSRKKGFCLSEAMLDTVIGKYKVGSLLNVPLGVAQKKEKWAEAIKQIQEKSMKEIGIPCIYGVDQIHGTTYTLDGTMFPQGINMGATFNRELTRRGAKISAYETKAGCIPWTFAPVVDLGRDPRWARMWENYGEDCYVNAEMGVSAVKGFQGEDPNRIGEYNVAACMKHYMGYGVPVSGKDRTPSSISRSDMREKHFAPFLAAVRQGALSVMVNSGVDNGLPFHANRELLTEWLKEDLNWDGLIVTDWADINNLCTRDHIAATKKEAVKIVINAGIDMSMVPYEVSFCDYLKELVEEGEVSMERIDDAVARVLRLKYRLGLFDHPYWDIKKYDKFGSKEFAAVALQAAEESEVLLKNDGNILPIAKGKKILLTGPNANSMRCLNGGWSYSWQGHVADEYAQAYHTIYEALCEKYGKENIIYEPGVTYASYKNDNWWEENKPETEKPVAAAAQADIIITCIGENSYCETPGNLTDLTLSENQRNLVKALAATGKPIVLVLNQGRPRIINDIVPLAKAVVNIMLPSNYGGDALANLLAGDANFSGKMPFTYPRLINALATYDYKPCENMMDIQWPFGFGLSYTNYKYSNLKVNKPTFNADDELIFTVDVTNTGKVAGKESVLLFSKDLVASSTPDNIRLRNFEKVSLEPGETKTVTLKLKGSDLAFVGYDGKWRLEKGDFKIKCGDQWMDIVCDQTKVWNTPNKN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Bacteroides ovatus
|
| molecule keywords |
Beta-glucosidase BoGH3B
|
| total genus |
281
|
| structure length |
745
|
| sequence length |
757
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.2.1.21: Beta-glucosidase. |
| pdb deposition date | 2016-05-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00933 | Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain |
| A | PF01915 | Glyco_hydro_3_C | Glycosyl hydrolase family 3 C-terminal domain |
| A | PF14310 | Fn3-like | Fibronectin type III-like domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
