The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
67
|
sequence length |
218
|
structure length |
217
|
Chain Sequence |
SLPRLGEPAPAFEAQTTFGPVKFPDDFKGQWVVLFSHPADFTPVTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGIEIPFPIIADHNMEVAKKYGMIHPAQSTTFTVRALFVIDDKGILRAMIYYPLTTGRNIREVIRLVDALQTADREGVATPADWVPEPQTWEFTEENTKVIVPPPTTYEDAVKRLQEGYECADWYICKKKV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural properties of the peroxiredoxin AhpC2 from the hyperthermophilic eubacterium Aquifex aeolicus.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Peroxiredoxin
|
| total genus |
67
|
| structure length |
217
|
| sequence length |
218
|
| chains with identical sequence |
F, G, H, I, J, L
|
| ec nomenclature |
ec
1.11.1.15: Peroxiredoxin. |
| pdb deposition date | 2017-08-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF00578 | AhpC-TSA | AhpC/TSA family |
| D | PF10417 | 1-cysPrx_C | C-terminal domain of 1-Cys peroxiredoxin |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
