5ZWNS

Cryo-em structure of the yeast pre-b complex at an average resolution of 3.3 angstrom (part ii: u1 snrnp region)
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
146
structure length
131
Chain Sequence
b'ALYFQNLPSRPANKENYTRLLLKHINPNNKYAINPSLPLPHNKLLDDQMGLLEVSISRSSKMTNQAFLTFVTQEEADRFLEKYTTTALKVQGRKVRMGKARTNSLLGLSIEMQKTYNLDIKKVLKARKLKR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords pre-mRNA
publication title Structures of the fully assembledSaccharomyces cerevisiaespliceosome before activation
pubmed doi rcsb
molecule tags Splicing
total genus 25
structure length 131
sequence length 146
ec nomenclature
pdb deposition date 2018-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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