6LOI | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	235
structure length	217
Chain Sequence	YAFDKEGQIPQHIAIIMDGNGRWAQNRRLPRIAGHKEGMDTVKKITKHASHLGVKVLTLYAFPVDFFDTFVPELIKENVKVNVMGYQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKAYTADEITEETIADHLMTGFLPTELRDPELLIRTSGEERISNFLLWQIAYSELFFTKALWPDFSGDTLETAIASFQNR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 217 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

217 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Investigations into the Antibacterial Mechanism of Action of Viridicatumtoxins. pubmed doi rcsb
molecule keywords	Isoprenyl transferase
molecule tags	Transferase
source organism	Enterococcus faecalis
total genus	75
structure length	217
sequence length	235
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 2.5.1.-:
pdb deposition date	2020-01-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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6LOIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations