The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
143
|
sequence length |
569
|
structure length |
550
|
Chain Sequence |
NEVGYDDIGGCRKQLAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLADDVDLEQIAAETHGYVGSDLAALCSEAAMQQIREKMDLIDLDEDTIDAEVLDSLGVTMDNFRYALGVSNPSALREVAVVEVPNVRWEDIGGLEQVKQELKEQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKARGGSIGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDQLIYVPLPDEAGRLSILKAQLRKTPVSKDVDLAYIASKTHGFSGADLAFITQRAVKLAIKESIAAEIEPVPELTKRHFEEAMRDARRSVSDVEIRRYEAFAQQMKNA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
pubmed doi rcsb |
| molecule tags |
Motor protein
|
| source organism |
Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719)
|
| molecule keywords |
Npl4
|
| total genus |
143
|
| structure length |
550
|
| sequence length |
569
|
| chains with identical sequence |
E, F, H, I, J
|
| ec nomenclature | |
| pdb deposition date | 2018-02-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF00004 | AAA | ATPase family associated with various cellular activities (AAA) |
| D | PF02359 | CDC48_N | Cell division protein 48 (CDC48), N-terminal domain |
| D | PF02933 | CDC48_2 | Cell division protein 48 (CDC48), domain 2 |
| D | PF09336 | Vps4_C | Vps4 C terminal oligomerisation domain |
| D | PF17862 | AAA_lid_3 | AAA+ lid domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
