6G5RA

Structure of the ub2h domain of e.coli pbp1b in complex with lpob
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
114
structure length
114
Chain Sequence
MGSSHHHHHHSSGLVPRGSHMGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Penicillin-binding protein 1B
publication title Induced conformational changes activate the peptidoglycan synthase PBP1B.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 11
structure length 114
sequence length 114
ec nomenclature ec 2.4.1.129: Peptidoglycan glycosyltransferase.
pdb deposition date 2018-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14814 UB2H Bifunctional transglycosylase second domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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