6HE5K

20s core particle of pan-proteasomes
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
9
structure length
9
Chain Sequence
PDLKGVMFV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Proteasome subunit alpha
publication title Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.
pubmed doi rcsb
source organism Archaeoglobus fulgidus (strain atcc 49558 / vc-16 / dsm 4304 / jcm 9628 / nbrc 1
structure length 9
sequence length 9
chains with identical sequence H, I, J, L, M
ec nomenclature
pdb deposition date 2018-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00004 AAA ATPase family associated with various cellular activities (AAA)
K PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain
K PF17862 AAA_lid_3 AAA+ lid domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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