6JFX | Genus

Total Genus 227

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	227
sequence length	667
structure length	650
Chain Sequence	HGTIDYGDVTVTGGISVFDAKFDELYVYDGDDLGAVYAPEETRFRLWAPTASEAFVVLYETEDGMPVKELPMKRDVQGTWTLTVAEDCGGLFYTYRVKVGEQWNEAVDPYAKAVGVNGTKTAILDLRSTNPEGWENDQKPPLASPTDAVIYELHVRDLSIHPQSGIREKGKFLGLTEEGTRGPNGIPTGLDHITGLGVTHVQLLPIYDYSQESVDESRLDEPHYNWGYDPQNYNVPEGSYSTDPHNPAARILELKRLIQKLHARGLRVIMDVVYNHVYDGYLIHFTKLVPGYYLRYKADRTFSDGTFCGNECASERPIMRKYIIESILHWVREYHIDGFRFDLMGMIDIETMNEIRRRLDEIDPTILTIGEGWMMETVLPKELRANQDNAEKLPGIGMFNDGMRDAVKGDIFIFDRKGFISGGDGFEDGVKRGVAGGINYGGQLRQFAVEPVQSVNYVECHDNHTLWDKIELSTPGASDEERRAMHRLASAIVLTSQGIPFLHAGQEFMRTKGGVENSYKSPIEVNWLDWERCAAHQDDVSYMRSLIALRKAHPAFRLKTADEIRAHLRFEAAPPHTVAFTLRDHAGGDPDRHLYVLYNANPGALSLELPALGPWEVRFGGEHVLALEAGASGARLEVRGVGVVVLAVPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 650 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

650 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 71 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Paenibacillus barengoltzii
publication title	Crystal structure of Pullulanase from Paenibacillus barengoltzii complex with maltopentaose rcsb
molecule keywords	Pulullanase
total genus	227
structure length	650
sequence length	667
ec nomenclature	ec 3.2.1.41: Pullulanase.
pdb deposition date	2019-02-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00128	Alpha-amylase	Alpha amylase, catalytic domain
A	PF02922	CBM_48	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

Image from the rcsb pdb (www.rcsb.org)

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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6JFXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations