6LKCA

Crystal structure of pfad from shewanella piezotolerans in complex with fmn
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
532
structure length
530
Chain Sequence
b'SPWPWLVTDTNISFDVTVMEQQLRDFSRGCYVVNHNEKGVGIAQTAELVADQASNSLPVAAFTPALGTESLGDSNFRRVHGVKYAYYAGAMANGISSEELVIALGQAGILCSFGAAGLIPSRVEKAINRIQAALPNGPYMFNLIHSPSEPALERGSVELFLKHKVRTVEASAFLGLTPQIVYYRAAGLSRDAQGNIVVANKVIAKVSRTEVAEKFMMPAPAKMLQKLVDEGSITPEQMELAQLVPMADDITAEADSGGHTDNRPLVTLLPTILALKEEIQTKYQYPTPIRVGCGGGVGTPDAALATFNMGAAYIVTGSVNQACVEAGASEHTRKLLSTTEMADVTMAPAADMFEMGVKLQVVKRGTLFPMRANKLYELYTRYDSIEAIPADEREKLEKQVFRSTLDDIWAGTVAHFNERDPKQIERATDNPKRKMALIFRWYLGLSSRWSNSGETGREMDYQIWAGPALGAFNQWAKGSYLDNYQERNAVDVAKHLMYGAAYLNRVNSLTSQGVKLPTQLLRWKPTQRMA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Polyunsaturated fatty acid synthase PfaD
publication title Structural insight into the enoyl reduction in the biosynthesis of long-chain polyunsaturated fatty acid in Shewanella piezotolerans
rcsb
source organism Shewanella piezotolerans (strain wp3 / jcm 13877)
molecule tags Biosynthetic protein
total genus 181
structure length 530
sequence length 532
chains with identical sequence B
ec nomenclature ec 1.3.1.9: Enoyl-[acyl-carrier-protein] reductase (NADH).
pdb deposition date 2019-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03060 NMO Nitronate monooxygenase
A PF18328 PfaD_N Fatty acid synthase subunit PfaD N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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