6LSRw

Cryo-em structure of a pre-60s ribosomal subunit - state b
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
225
structure length
225
Chain Sequence
NFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural snapshots of human pre-60S ribosomal particles before and after nuclear export.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Ribosome
molecule keywords Zinc finger protein 622
total genus 60
structure length 225
sequence length 225
ec nomenclature
pdb deposition date 2020-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
w PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
w PF08079 Ribosomal_L30_N Ribosomal L30 N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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