6N1NA

Crystal structure of class d beta-lactamase from sebaldella termitidis atcc 33386
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
250
structure length
247
Chain Sequence
SNAMVSNVNLQKIFDENKITGSVTIYDYKNKIWIYSNEEDSKIRRLPASTFIPNSLIFLEEEVVKDENEAMEWDGIKRYIENWNKDLNLREAYEYSALWFYMKGAGKIKSEKYKEYLKEFNYGNQIVSEKKNSFWIDRSLKISPEEQIDFLINLYEEKFMLSEKTYKIVKDIMINEKTPEYTLRGKTGWGREGAENIIWYVGYIEAKENVYFFAVRIINASEERNSYLLDFRKQLTMMAFRELGIIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of class D beta-lactamase from Sebaldella termitidis ATCC 33386
rcsb
molecule tags Hydrolase
source organism Sebaldella termitidis
molecule keywords Beta-lactamase
total genus 79
structure length 247
sequence length 250
ec nomenclature ec 3.5.2.6: Beta-lactamase.
pdb deposition date 2018-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00905 Transpeptidase Penicillin binding protein transpeptidase domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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