6QTRA

Crystal structure of a mutant arabidopsis wd40 domain in complex with a transcription factor
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
329
structure length
303
Chain Sequence
AMTFTRYSRLRVIAEIRNIVSSIEFDRDDELFATAGVSRIKVFDFSSVVNEQCPIVEMSTRSKLSLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWTRQEASVINIDMKANICVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of a mutant Arabidopsis WD40 domain in complex with a transcription factor
rcsb
molecule tags Plant protein
source organism Arabidopsis thaliana
molecule keywords E3 ubiquitin-protein ligase COP1
total genus 78
structure length 303
sequence length 329
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2019-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00400 WD40 WD domain, G-beta repeat
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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