6RWBA

Cryo-em structure of yersinia pseudotuberculosis tcaa-tcab
Total Genus 421
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
421
sequence length
1973
structure length
1873
Chain Sequence
APKILQPEARTDLSLAEGIPERANEYADPASIQSLFSPGRYLCELYHVAKELHEDGNKLHIDKRRPDLQDLVLNNSNMNQEVSSLEILLNVLQTKTPLDELTKDTEAHANDSSFTLPYDDNLTVINAILEDKAISLREIAVLLTEESDFSPTPALVQEQLGLNPASYALIDIKSPLDESYAKRLAHATQLSVEQLQWLNKNAIENSSNKNDPAKLEILAVISEYRRLHQRYGLSVDPFIAIINAVNTTHTNENKTSFFQQIFSTLDVDAGFNFLDQGSWEVIIRKALGITAEELLRIAKYCFGKSSISNVKMNSKKFSQLYRMAMIPRTLGVSFSQAEYLWQLYSHSDENIMEKIAQGNALTIIDAIIVLENTLQWMSEQKLDITTLQAMLTKQYSTTATPELFNFLSNIYQTLGKQVYSESLKPNLYRSLANGFHLKANVVAGLVNWLAKNDSEFTLERFWQNISMTFAEEPSLHQLEVHQPLLIQCQKLSQYVLIAQWAELSEQEIALILLPNGIDNRGSAPSPSITLLKLLSEFKLCQQEAKVSQSELFDIMQQLITDTNEKQEKLRNSADKVIRSIAKSIGSINNSMDDIDSTISIRNGSATLFPPEHPMYKALKLEVSNLEKSKIQLEGKKKEEEIKLEQAKDNIQSLINNWDSEIIIRLADAYHWDINIANSMFILIFGEKINFTFHYENRNDYHYEEHYGYRFEQKPMYSFDKKLTNGFGSILLLKNHIYIAEKLKIHPGTIIKIKNYIFDDKSNELENIANKLRVNLGSPTSTVLNKINESRRDALVNYYLAKNVSGDEKIKTAEQLYQYLLLDTKIGHEVKTSPIAEAISSLQIYINRCVDGEENDLHEKNISTHFSSDNFLHGWNSYNKRYARWAGKEKLMYYAADYIDPTLRYNKTELFNTFEQSINNSRLTEKSVKSALQSYLISYEKLAQIDTIKELYVENIKTHFFLGKTRESPCQYYWRSGEQLSNDSHHLRWSEWKKVECNINGTEEKFFINLSWYRNRLYVDWLNKTAFKTDEGKGKSEYHYNAAYKNDNNAWNDNISNMKIGLPWEQSKDIDEIPPIFINQDNVGGNSFNRITFDTNIIHELDGDISLLPPDSLPLVEKLQTSVDELLSYSTQKDKIGLDAFSGSYGIYFWEFFFHIPFLASMRFLNEQRFDLAQHWLKYLLNSAGYRDRNGNLLKEGDNILYWNSLPLQQDTDWDKNTLTLPTDDPDVIAMQDPMQYKLAIFMRTLDLIISQGDQAYRQLERDTLAEAKIYYIQASQLLGSRPDLNRGHQWENIKLAEESRQAENGHFLPPYNEILLSYWDKLEIRLYNLRHNLNLDGQPLHLPLFATPVDPKALQRQHGAGNGINSGEQMATAQTSLYRFPLLIERAKSAVSSVIQFGNSLQSVLERQDNEAMTLLFQQQQQKVLQHTKDIQNNNIQVLQANLEATNSLKSAAKQRSKHYKELLDNGISSREQSGLDLRIDAGAVNIASVAPLMLAAALDTAPNVFGLADGGSHWGAVPYATSATLQISAGLTESRANINDIKANYDRREQEWTLQKNQADKDAEQLAHQYTSVQEQLNMAQKQRNLAELEQGHADALYQMQSTRFTGKELYNWMAGRLSGLYFQLFDATQPLCLMAKAVLEKEVDKAKTDGLFIRSGWNDLYQGLLAGEDLQLNLQKLENVWLMEEQRALEVERTVSLAQHYQQLSDHKFNLAEIVTGYMAQDKDQKTGNEQDFVELKNSTLIASLSIKGLNLVEDYPETMHLGDIRRIKQISVSLPALLGPYQDVQATLDYAGENTHLAKGCTALAISRGMNDSGQFQLDFNDGKYLPFEGIDISDKGTLVLRFPNATSKQKLLLQSLSDIILHIRYTIRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Common architecture of Tc toxins from human and insect pathogenic bacteria.
pubmed doi rcsb
molecule keywords Toxin,Toxin complex subunit TcaB,Putative toxin subunit,Putative toxin subunit,Toxin,Toxin complex subunit TcaB,Putative toxin subunit,Putative toxin subunit,Toxin,Toxin complex subunit TcaB,Putative toxin subunit,Putative toxin subunit,Toxin,Toxin complex subunit TcaB,Putative toxin subunit,Putative toxin subunit
molecule tags Toxin
source organism Yersinia pseudotuberculosis
total genus 421
structure length 1873
sequence length 1973
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2019-06-04
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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