The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
168
|
sequence length |
799
|
structure length |
684
|
Chain Sequence |
RDKAPVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYNKRFAADIISVLAMTMSGERECLKYRLVGAGEVAKEWQELDDAEKVQREPLLTLVKEIVPLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVMLGRHGVFLELSEDVEEYEDLTEIMSNVNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETETYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSHDADPEVSYNSIFAARLAAMLRQLAQYHAKKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/protein binding
|
| molecule keywords |
26S proteasome non-ATPase regulatory subunit 1
|
| publication title |
Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome.
pubmed doi rcsb |
| total genus |
168
|
| structure length |
684
|
| sequence length |
799
|
| ec nomenclature | |
| pdb deposition date | 2020-04-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| f | PF01851 | PC_rep | Proteasome/cyclosome repeat |
| f | PF17781 | RPN1_RPN2_N | RPN1/RPN2 N-terminal domain |
| f | PF18051 | RPN1_C | 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
