The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
234
|
structure length |
209
|
Chain Sequence |
PVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Protein transport
|
| molecule keywords |
Cag pathogenicity island protein
|
| publication title |
Cryo-EM analysis of the Helicobacter pylori Cag type IV secretion system reveals an expanded core complex and unique species-specific components
rcsb |
| total genus |
40
|
| structure length |
209
|
| sequence length |
234
|
| chains with identical sequence |
BY, CY, DY, EY, FY, GY, HY, IY, JY, KY, LY, MY, NY
|
| ec nomenclature | |
| pdb deposition date | 2020-05-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| AY | PF03743 | TrbI | Bacterial conjugation TrbI-like protein |
| AY | PF07337 | CagY_M | DC-EC Repeat |
| AY | PF14585 | CagY_I | CagY type 1 repeat |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
