The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
196
|
structure length |
196
|
Chain Sequence |
DRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| molecule keywords |
28S ribosomal RNA
|
| total genus |
38
|
| structure length |
196
|
| sequence length |
196
|
| ec nomenclature | |
| pdb deposition date | 2020-07-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| Ls | PF00428 | Ribosomal_60s | 60s Acidic ribosomal protein |
| Ls | PF00466 | Ribosomal_L10 | Ribosomal protein L10 |
| Ls | PF17777 | RL10P_insert | Insertion domain in 60S ribosomal protein L10P |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
