7A5IS6

Structure of the human mitoribosome with a- p-and e-site mt-trnas
Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
126
structure length
126
Chain Sequence
AGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVETGKALLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (23-26)AH1 (13-22)TI1 (6-9)AH2 (31-36)TVIII1 (36-39)AH3 (67-75)AH4 (95-105)TIV2 (75-78)TI2 (7-10)O1 (43-45)TVIII2 (40-43)AH5 (114-125)Updating...
connected with : NaN
molecule tags Ribosome
publication title Elongational stalling activates mitoribosome-associated quality control.
pubmed doi rcsb
molecule keywords nascent chain
total genus 14
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2020-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S6 PF10484 MRP-S23 Mitochondrial ribosomal protein S23
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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