7AFO | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	106
structure length	106
Chain Sequence	MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Jmol getValue AUDIOCallback null

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loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/60e678cc97ec6f2945932187/pdb.gz): 2866 ms

reading 106 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

106 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:105});backbone only;select *;

platformSpeed = 8

cartoonsFancy = true

sheetSmoothing = 1.0

traceAlpha = true

loadScript /static/js/j2s/core/corescriptcmd.z.js

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
source organism	Escherichia coli
publication title	A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. pubmed doi rcsb
molecule keywords	16SrRNA (body domain of the 30S ribosome)
total genus	28
structure length	106
sequence length	106
ec nomenclature
pdb deposition date	2020-09-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF01250	Ribosomal_S6	Ribosomal protein S6

Image from the rcsb pdb (www.rcsb.org)

3J9ZSF 3JA1SF 3JCDf 3JCEf 3JCJn 3JCNi 4ADVF 4V47BF 4V48BF
similar chains in the Genus database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the Genus database (40% sequence similarity)
3J9Z SF; 3JA1 SF; 3JCD f; 3JCE f; 3JCJ n; 3JCN i; 4ADV F; 
#similar chains, but unknotted
4V48 BF; 
#similar chains in the pdb database (40% sequence similarity)

7AFOF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations