7AMBA

Crystal structure of rsfolder2 in its fluorescent on-state
Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
230
structure length
229
Chain Sequence
MVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLKFICTTGKLPVPWPTLVTTLVLCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKSNFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (4-8)3H4 (77-82)S1 (13-23)TIV1 (22-25)S2 (26-37)TI2 (38-41)S3 (42-49)TI1 (37-40)S11 (218-228)S10 (200-209)EMPTY3H2 (58-64)TI9 (211-214)TII1 (101-104)S4 (93-101)S9 (177-188)S6 (119-129)AH1 (84-88)TVIa1 (88-91)S5 (106-116)TI4 (89-92)TI8 (172-175)TIV2 (115-118)TI5 (132-135)TIV3 (135-138)S8 (161-171)TI7 (137-140)S7 (149-156)3H5 (157-159)TI3 (49-52)O1 (143-145)3H3 (70-72)Updating...
connected with : NaN
molecule tags Fluorescent protein
source organism Aequorea victoria
publication title Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement.
pubmed doi rcsb
molecule keywords Green fluorescent protein
total genus 62
structure length 229
sequence length 230
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2020-10-08
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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