The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
443
|
sequence length |
2054
|
structure length |
2054
|
Chain Sequence |
RPLVLNHGSIESTILIPTTEYHFYQTLLEGFRKSLPQVTEGFADDDEPSSKAELLMKFLGYIVQSGVSNQQEQLAAAKLVLNEFESRFLQGLNLHSYAAILLKSETFPTTLLKIKENLIKNYYLGRALVYLPGQRGLVYPPSALLNAGKSGSAQIYAIFGGQGNTDDYFEELRDIYHIYQGLVSDFVTKAQLKLQELIRTTPETDRIYTQGLDLINWLENKDKTPDQQQLLSIPMSCPLICVIQLCHYIVTCRILGITPGQLRDSLKGTTGHSQGLVTAVVVSSADSWESFEKLALQAVEFMFYIGVRGLQTYPNTSLPPSIVQDSEENAEGTPSPMLSVRDLSYDQLVKFVNETNQHLPEAKHIDISLINGPRNVVLTGPPQSLYGLNLNLRKAKAPSGLDQARIPFSERKLRFSNRFLPIMSPFHSHLLSPSTEKIVADLKKAGVEFSQSSMKLPVFDTYDGKDLRSYSGSIAARLVECITKLRVNWELSTEFNSTHVLDFGPGGASGLGVLTHRNKEGTGSRVIVAGVLDAESEDSEFGYKQEIFESNEKAIKYAPNWLKEYKPKLVKTSAGKIFVDTKFSRLLGRAPLMVPGMTPTTVSPDFVAATLNAGFHTEIAGGGYFAPSIMKAALQRVIDQVTPGTGVGINLIYVNPRMLQWGIPMIKELREQGFPIQSLSIGAGVPSLEVATEYIETLGLAHLGLKPGSIDAVNQVITIAKAHPNFPIVLQWTGGRGGGHHSFEDFHQPILQMYSKIRKCKNIILIAGSGFGSAEDTYPYLTGSWSHQFSYPSMPFDGVLFGSRVMTAKEAKTSPAAKQAIADCTGVDNSQWENTYKKPTGGIITVRSEMGEPIHKIATRGVMLWKELDDTIFTLPKNKMLEAIAKKKDYIIKKLNADYQKPWFAKNEKGTCDLEDMTYKQIAERLVELMYVRKSQRWIDVTLRNFTGKFLRRIEERFATKVGTISLIQNFSQLEEPEKAIDSVFKAYPEAASQLINEEDCDWFLLEAQSPTQKPVPFIPVLDERFEFFFKKDSLWQSEDLEAVVGEDVQRTCILHGPVAAQFSNKVDEPIKDILENIHKGHIKSLVKEVYNGDESKIPVVEYFSSVDSFSDTAIEGVKIERSRNTETFTVTSGNVDNQQWFDLLAGKELSWRRAFITAARLVQGTNFVSNPAHSVLAPSKDLVVKIENGSDAKKTVLTAFQRVRGKYVPAVSLKSIGDLKIKLELIETRTADKSAVALELFYNYKPTDGFAPILEVMEGRNTSIKNFYWKLWFGSSVPVDLDFDANKPISGGEASVSSQAIAEFTHAVGNSCEDFVPRAGRPQLAPMDFAIVLGWKAIMKAIFPKTVDGDILKLVHLSNGYKMFPGADPLKKGDVVSTVAHIRSVVNGETGKTVEVVGVISRDGKPVLEVNSQFFYRGKYQDFGNSFKKTTETPVQVAFKSAKDIAVLKSKEWFHLEKDIDLLNQTLTFRCESYVKFKSSTVFASVKTTGQALLELPSKEIIQVAEINYESGSSYGNPVLDYLTRHGSTIEQPIMFENAIPLAQGTELTSKAPGTNETYAAVSGDYNPIHVNKVFASYANLPGTITHGMYSSAAVRALVEQWAAQNVATRVRAFKADFVGMVLPNDELVTHLEHVGMINGRKIIKVETKKVETEEVVLIGEAEIEQPVSTFVFTGQGSQEQGMGMDLYNSSEVAKSVWDRADVHFINNYGFSILDIVKNNPTELTVHFGGAKGRSIRNNYISMMFETVAADGQLKSEKIFKEINEDTISFTFKSPTGLLSATQFTQPALTLMEKASFEDMKSKGLVPSESMFAGHSLGEYSALTSLGDVMPIESLVDVVFYRGMTMQVAVPRDEQGRSNYGMIAVNPSRVSSTFNDSALRFVVEHIAQQTGWLLEIVNYNVENTQYVAAGDLRGLDTLSNVLNVFKIQKIDIVKLQETISLDEVKVHLSEIVDEVSKKSSSKPQPIDLERGFACIPLKGISVPFHSSYLRSGVKPFQTFLCKKIPKSAVKPANLIGKYIPNLTAKPFQLTKEYFEDVYELTKSEKIKHILDHW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insight into Pichia pastoris fatty acid synthase.
pubmed doi rcsb |
| molecule tags |
Biosynthetic protein
|
| molecule keywords |
Fatty acid synthase subunit alpha
|
| total genus |
443
|
| structure length |
2054
|
| sequence length |
2054
|
| ec nomenclature |
ec
1.3.1.9: Enoyl-[acyl-carrier-protein] reductase (NADH). |
| pdb deposition date | 2020-12-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00698 | Acyl_transf_1 | Acyl transferase domain |
| B | PF01575 | MaoC_dehydratas | MaoC like domain |
| B | PF08354 | DUF1729 | Domain of unknown function (DUF1729) |
| B | PF13452 | MaoC_dehydrat_N | N-terminal half of MaoC dehydratase |
| B | PF16073 | SAT | Starter unit:ACP transacylase in aflatoxin biosynthesis |
| B | PF17828 | FAS_N | N-terminal domain in fatty acid synthase subunit beta |
| B | PF17951 | FAS_meander | Fatty acid synthase meander beta sheet domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
