7BODL

Bacterial 30s ribosomal subunit assembly complex state m (body domain)
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
123
structure length
122
Chain Sequence
ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA (body domain of 30S subunit)
total genus 13
structure length 122
sequence length 123
ec nomenclature
pdb deposition date 2021-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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