7DNIM

Mda5 cards-mavs card polyub complex
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
97
structure length
97
Chain Sequence
MPFAEDKTYKYICRNFSNFCNVKVVKILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCKLVDLADEVASVYQSYQP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (2-14)TII1 (65-68)AH3 (54-63)TI1 (15-18)TI2 (16-19)TI3 (17-20)TI4 (19-22)TIV1 (50-53)3H1 (24-26)3H2 (28-30)EMPTYTI5 (31-34)AH2 (36-49)AH5 (82-95)AH4 (68-78)Updating...
connected with : NaN
molecule tags Immune system
source organism Homo sapiens
publication title Ordered assembly of the cytosolic RNA-sensing MDA5-MAVS signaling complex via binding to unanchored K63-linked poly-ubiquitin chains
doi rcsb
molecule keywords Ubiquitin
total genus 27
structure length 97
sequence length 97
chains with identical sequence N, O, P
ec nomenclature
pdb deposition date 2020-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF16739 CARD_2 Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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