7EAJ1

Echovirus3 empty expanded particle in complex with 5g3 fab
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
237
structure length
237
Chain Sequence
YHSRTESSIENFLCRAACVYIATYKSAGGTPTERYASWRINTRQMVQLRRKFELFTYLRFDMEITFVITSTQDPGTQLAQDMPVLTHQIMYIPPGGPVPNSATDFAWQSSTNPSIFWTEGCAPARMSVPFISIGNAYSNFYDGWSHFTQEGVYGFNSLNNMGHIYVRHVNEQSLGVSTSTLRVYFKPKHVRAWVPRPPRLSPYVKSSNVNFKPTAVTTERKDINDVGTLRPVGYTNH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords VP1
publication title Structural basis for neutralization of an anicteric hepatitis associated echovirus by a potent neutralizing antibody.
pubmed doi rcsb
total genus 36
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2021-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00073 Rhv picornavirus capsid protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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