7JSSg

Arfb rescue of a 70s ribosome stalled on truncated mrna with a partial a-site codon (+2-ii)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
149
structure length
149
Chain Sequence
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/translation
molecule keywords 50S ribosomal protein L2
publication title ArfB can displace mRNA to rescue stalled ribosomes.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 26
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2020-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
g PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
g PF03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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