7M4VK

A. baumannii ribosome-eravacycline complex: 50s
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
144
structure length
144
Chain Sequence
TLRLNELAPAEGAKREHRRLGRGIGSGVGKTGGRGIKGQKSRKSGGVRPGFEGGQTAIYRRLPKFGFTSQIALKTAEVRLSELSKVEGDIVSLETLKAANVVRRDQIRARIVLSGEITRAFTVQGVALTKGAKAAIEAAGGKVE
2040608010012014014012010080604020
0510152025Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (11-14)TIV2 (25-28)TI2 (24-27)TII'1 (30-33)TIV3 (27-30)TI'1 (32-35)3H1 (40-42)TIV4 (43-46)TII2 (49-52)TI'2 (53-56)TI3 (58-61)3H2 (72-75)S1 (76-80)3H3 (81-86)S2 (91-92)S4 (123-124)AH1 (94-100)TI5 (104-107)TVIII1 (101-104)S3 (109-113)TIV6 (124-127)S5 (128-129)S6 (143-144)TI1 (4-7)AH2 (131-140)Updating...
connected with : NaN
molecule tags Ribosome
publication title Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii
rcsb
molecule keywords 50S ribosomal protein L33
total genus 25
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2021-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00828 Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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