7N2CLI

Elongating 70s ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to ef-g(gdp) (int2)
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
149
structure length
149
Chain Sequence
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE
2040608010012014014012010080604020
0510152025Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ribosome
source organism Escherichia coli (strain k12)
publication title Structural basis of early translocation events on the ribosome
doi rcsb
molecule keywords 16S rRNA
total genus 29
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2021-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
LI PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
LI PF03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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